Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G114200.1 | Wheat | plastid | 94.45 | 93.17 |
| HORVU3Hr1G017750.4 | Barley | cytosol | 65.83 | 92.41 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 58.83 | 81.93 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 74.12 | 80.19 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 52.99 | 63.47 |
| KRH31013 | Soybean | cytosol | 53.06 | 58.32 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 34.25 | 57.93 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 59.12 | 57.91 |
| PGSC0003DMT400072858 | Potato | cytosol | 59.99 | 57.42 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 60.85 | 57.41 |
| Solyc05g013040.2.1 | Tomato | cytosol | 59.77 | 57.21 |
| Solyc04g005560.2.1 | Tomato | nucleus | 59.34 | 57.03 |
| KRG97867 | Soybean | cytosol | 60.56 | 57.03 |
| AT1G13980.1 | Thale cress | cytosol | 59.63 | 57.0 |
| CDX98140 | Canola | cytosol | 59.48 | 56.98 |
| Bra019694.1-P | Field mustard | cytosol | 59.41 | 56.91 |
| CDY36422 | Canola | cytosol | 59.34 | 56.8 |
| KRH15072 | Soybean | cytosol | 58.76 | 55.14 |
| KRH73064 | Soybean | cytosol | 58.26 | 54.89 |
| KRG97865 | Soybean | cytosol | 57.46 | 54.11 |
| KRH31014 | Soybean | nucleus | 56.67 | 53.36 |
| CDY69502 | Canola | cytosol | 8.15 | 42.64 |
| TraesCS3A01G245300.1 | Wheat | cytosol | 38.36 | 38.38 |
| TraesCS7A01G398300.1 | Wheat | cytosol, plastid | 21.27 | 17.45 |
| TraesCS6A01G168000.1 | Wheat | plastid | 20.91 | 17.24 |
| TraesCS4A01G067400.1 | Wheat | plastid | 21.63 | 16.78 |
| TraesCS2A01G202900.1 | Wheat | cytosol | 18.53 | 16.21 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0032012 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 |
| PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf |
| InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EnsemblPlantsGene:TraesCS3A01G098600 | EnsemblPlants:TraesCS3A01G098600.1 | TIGR:cd00171 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:63559793..63564495
Molecular Weight (calculated)
154591.0 Da
IEP (calculated)
5.028
GRAVY (calculated)
0.020
Length
1387 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPPPSPSGSR AAMACVVASE VAAVLAIMRR NVRYGGDEER LDHPLVAGLK SLRRAAATWG PRRWRNVEPL LFLGPFLDVV RSDEAGAPAT GAALSSLCKV
0101: LSLDLVGPDA PGADRAMAAV VEAVAGCRFE VTDAASEEAV LARALQVLLA CVRGRAARAL SNRHVCDVVS TCFRVVQQAG AKGELLQRVS RQTMQEVVRC
0201: VFARLPDIDP TAVEDQKIAS KNEVSSASEM GNGSDSVCLS SSQDQVGGEF GVVQDEAMME LFGVPCMVEI LQFLCSLLNI AEDSQVDPNM NPIDFDEDIP
0301: LFALGLINSA IELSASSIQR HPKLLAFVQD ELFRNLMQFG LSDSPLILST VCSVIFTLFY HLRRELKLQI EAFFVCVILR LTQSRYGASY QQQEVALETL
0401: VDFCQQKDFM VEMYTNMDCD LQCSNVFEDL VNVLSKSAFP EESTLSTLNV LALDGLVAVI QAIAERIGNS PQHCQQSVQE LSEYFSFWQL KCENINDPDQ
0501: WVRFVNQQKS IKRKLMVGVE HFNRDKRKGF EYLQAAHLLP EKLDPQSVAL FFRYSPGLDK NLLGDYLGNH DEFSIQVLHE FSRTFDFKEL NLDAALRLFL
0601: ETFRLPGESQ KIQRILEAFS DRYYEESPEL FVNRDAALVL SYSVILLNTD QHNVRVKNKM SEEDFIRNNR RINGGNDLPR EFLSELYYSI CRNEIKTIPE
0701: QGVGCSEMSF SRWADLMFKS KRASAYIACH SYPFLDHDMF LIMARPTVAA ISVIFDNVEQ EEILTRCIDG FLSVAKLAAS YHLNDVLNDL VVALGKFTIL
0801: SIASCDDPAT AFGEDTKARM ATEALFTIAA THGDHINRGW RTIVDCILRF HEIGLLPACL TNDTADDEES FSASLPTKVS QVEPKKTYGL MGRFTQLLYL
0901: DAEEPRFQPT EEQLAAQRNA SETIKKCQIG TIFTESKFLQ ADSLLNLARA LIQAAGRPQK ITSSIDVEIN AVICLELIIA VTLNNRDRIV LLWHDVYEHI
1001: THIVQSTVMP CNLVEKAVFG LLDICQRLLP YKENLVDDLL RSLQLILKLD ARVADAYCES ITQKVACLVK DNATHIKSQL GWQTIISLLC VTAHHPDASD
1101: AGFEALIYIM FEGAHLSPAN FVLSVEASRQ FAGSRLGSAE RSIHALNLMA ESVNCLARWS HEVKEAGGEA ERMLEGIAEM WLRLVQALRK VCTDQREQVR
1201: DHALVLLHRC LVADGISVPS SAWLMSFDIV FQLLDELLEI AENFSPKHYR NMEASLLHAV KLLSKLSLQS LNDLSAHSGF SKLWLEVLDM IEKLMKAKVR
1301: GSSRTEKLQE AATELLKNIL LAMKVSGILS TTSSVGENSL WEATWLRVNK IAPSLQSVVF PDYDDAVQSA QSKLDIPAVS EGRLVPV
0101: LSLDLVGPDA PGADRAMAAV VEAVAGCRFE VTDAASEEAV LARALQVLLA CVRGRAARAL SNRHVCDVVS TCFRVVQQAG AKGELLQRVS RQTMQEVVRC
0201: VFARLPDIDP TAVEDQKIAS KNEVSSASEM GNGSDSVCLS SSQDQVGGEF GVVQDEAMME LFGVPCMVEI LQFLCSLLNI AEDSQVDPNM NPIDFDEDIP
0301: LFALGLINSA IELSASSIQR HPKLLAFVQD ELFRNLMQFG LSDSPLILST VCSVIFTLFY HLRRELKLQI EAFFVCVILR LTQSRYGASY QQQEVALETL
0401: VDFCQQKDFM VEMYTNMDCD LQCSNVFEDL VNVLSKSAFP EESTLSTLNV LALDGLVAVI QAIAERIGNS PQHCQQSVQE LSEYFSFWQL KCENINDPDQ
0501: WVRFVNQQKS IKRKLMVGVE HFNRDKRKGF EYLQAAHLLP EKLDPQSVAL FFRYSPGLDK NLLGDYLGNH DEFSIQVLHE FSRTFDFKEL NLDAALRLFL
0601: ETFRLPGESQ KIQRILEAFS DRYYEESPEL FVNRDAALVL SYSVILLNTD QHNVRVKNKM SEEDFIRNNR RINGGNDLPR EFLSELYYSI CRNEIKTIPE
0701: QGVGCSEMSF SRWADLMFKS KRASAYIACH SYPFLDHDMF LIMARPTVAA ISVIFDNVEQ EEILTRCIDG FLSVAKLAAS YHLNDVLNDL VVALGKFTIL
0801: SIASCDDPAT AFGEDTKARM ATEALFTIAA THGDHINRGW RTIVDCILRF HEIGLLPACL TNDTADDEES FSASLPTKVS QVEPKKTYGL MGRFTQLLYL
0901: DAEEPRFQPT EEQLAAQRNA SETIKKCQIG TIFTESKFLQ ADSLLNLARA LIQAAGRPQK ITSSIDVEIN AVICLELIIA VTLNNRDRIV LLWHDVYEHI
1001: THIVQSTVMP CNLVEKAVFG LLDICQRLLP YKENLVDDLL RSLQLILKLD ARVADAYCES ITQKVACLVK DNATHIKSQL GWQTIISLLC VTAHHPDASD
1101: AGFEALIYIM FEGAHLSPAN FVLSVEASRQ FAGSRLGSAE RSIHALNLMA ESVNCLARWS HEVKEAGGEA ERMLEGIAEM WLRLVQALRK VCTDQREQVR
1201: DHALVLLHRC LVADGISVPS SAWLMSFDIV FQLLDELLEI AENFSPKHYR NMEASLLHAV KLLSKLSLQS LNDLSAHSGF SKLWLEVLDM IEKLMKAKVR
1301: GSSRTEKLQE AATELLKNIL LAMKVSGILS TTSSVGENSL WEATWLRVNK IAPSLQSVVF PDYDDAVQSA QSKLDIPAVS EGRLVPV
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.