Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G370200.1 | Wheat | cytosol | 99.45 | 93.0 |
| HORVU5Hr1G088970.4 | Barley | plastid | 93.84 | 91.55 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 98.52 | 89.32 |
| EER91946 | Sorghum | plastid | 88.85 | 79.87 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 87.99 | 79.32 |
| Zm00001d029910_P001 | Maize | plastid | 87.99 | 79.1 |
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 80.19 | 74.12 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 60.69 | 67.18 |
| KRH31013 | Soybean | cytosol | 56.63 | 57.53 |
| PGSC0003DMT400072858 | Potato | cytosol | 64.66 | 57.21 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 65.6 | 57.21 |
| Solyc05g013040.2.1 | Tomato | cytosol | 64.59 | 57.14 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 63.03 | 57.06 |
| AT1G13980.1 | Thale cress | cytosol | 64.43 | 56.93 |
| CDX98140 | Canola | cytosol | 64.04 | 56.7 |
| Solyc04g005560.2.1 | Tomato | nucleus | 63.81 | 56.69 |
| Bra019694.1-P | Field mustard | cytosol | 63.96 | 56.63 |
| KRG97867 | Soybean | cytosol | 64.98 | 56.55 |
| CDY36422 | Canola | cytosol | 63.88 | 56.52 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 35.57 | 55.61 |
| KRH15072 | Soybean | cytosol | 62.17 | 53.92 |
| KRH73064 | Soybean | cytosol | 61.54 | 53.6 |
| KRG97865 | Soybean | cytosol | 61.0 | 53.09 |
| KRH31014 | Soybean | nucleus | 60.45 | 52.61 |
| TraesCS3A01G245300.1 | Wheat | cytosol | 39.7 | 36.72 |
| CDY69502 | Canola | cytosol | 4.6 | 22.26 |
| TraesCS2A01G202900.1 | Wheat | cytosol | 20.9 | 16.91 |
| TraesCS6A01G168000.1 | Wheat | plastid | 21.92 | 16.71 |
| TraesCS7A01G398300.1 | Wheat | cytosol, plastid | 21.53 | 16.32 |
| TraesCS4A01G067400.1 | Wheat | plastid | 22.15 | 15.88 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005086 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0032012 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 |
| PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 |
| InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EnsemblPlantsGene:TraesCS5A01G361300 | EnsemblPlants:TraesCS5A01G361300.1 |
| TIGR:cd00171 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:562536404..562540634
Molecular Weight (calculated)
143765.0 Da
IEP (calculated)
5.063
GRAVY (calculated)
-0.049
Length
1282 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGAVVEAVTG CRFEVTDPAS EEAVLARVLQ VLLACVRGRA APALSNRHVC AIVTTCFRVV QQAGTKGELL QRVSRQTMQE VIRCVFARLA DIEPTAIVNE
0101: QISKNQDLGA EELGNGKSDY VCLNSSGDEV GGGFGAVQDK DMMEPLGVPC MVEILQFLCS LLNIAEDMDV SQRMNGIDYD EDVPLFALGL INSVIELSAS
0201: SIDRHPKLLA FVQDELFHNL MQFGLSMSPL ILSTVCSTVF TLFYHLRQEL KLQIEAFFSC VILRLAQGRY GASYQQQEVA LEALVDFCRQ KEFMAEMYAN
0301: MDCDLQCSNI FEDLANLLSR SAFPVNSPLS ALNVLALDGL VAVIQAIAER TDHAHQHHGQ TVPEISEYFP FWQLKCEGSN DPDQWVRFVH QQKSIKRKLM
0401: VGVEHFNRDK KKGFEYLQGV HLLPEKLDPR SVALFFRYTP GLDKNLLGEY LGNHDEFSIL VLHEFAKTFD FEDMNLDAAL RLFLETFRLP GESQKIQRIL
0501: EAFSERYYEQ SPHMFVNRDA ALVLSYSVIM LNTDQHNVRV KKKMTEEDFI RNNRRINGGN DLPREFLSEL FYSICRNEIK TIPEQGAGCS EMSYSRWVDL
0601: MWKSKRTSVY IACDSYPFLD NDMFPIMAGP SVAAISVVFD NVEHEEILTG CIDGFLSVAK LAAFYHLDDV LNDLVVGLCK FTTLLNNSYA DDPVIAFGVD
0701: TKARMATEAV FTIATTYGDH IRSGWRNIVD CILRLHKIGL LPGRLTGDTG DDQESSSDSL PSKLGSYALA PQALPINTPK KTYGLMGRFS QLLYLDAEEP
0801: RSQPTEEQLA AQRNALETVK KCQIGTIFTE SKFLQADSLS NLARALIQAA GRPQRITSSL DDEGTAVFCL ELLITVTLNN RDRIVLLWQG VYEHITHIVQ
0901: STVMPCNLVE KAVFGLLHIC QRLLPYKENL VDDLLRSLQL ILKLDARVAD AYCENITLEV TRLVKANATH IKSQMGWRTI ISLLCVTARH PDASDAGFEA
1001: LVFIMSEGAH LSPANFIVSV EASRQFAESR VGSSERSIHA LNLMADSVNC LTRWSREVKE AGGEADRILE GIAEMWLRLV QALRKVCTDQ REEVRNHALL
1101: CLHRCLIVDG ISVSSSAWLM SFDIIFQLLD ELLEIAQSYS PKDFRNMEVS LLHAVKLLCK VFLQSLKDLS AQSSFSKLWL EVLDMIEKFM KVKLRGRRTE
1201: KLHEAIPELL KNILLVMKAN GVLSKTSASE ENTLWEATWL QVNKVAPSLQ PEVFPDNESD SAAEGEQSKP ESSAQEGQTA EQ
0101: QISKNQDLGA EELGNGKSDY VCLNSSGDEV GGGFGAVQDK DMMEPLGVPC MVEILQFLCS LLNIAEDMDV SQRMNGIDYD EDVPLFALGL INSVIELSAS
0201: SIDRHPKLLA FVQDELFHNL MQFGLSMSPL ILSTVCSTVF TLFYHLRQEL KLQIEAFFSC VILRLAQGRY GASYQQQEVA LEALVDFCRQ KEFMAEMYAN
0301: MDCDLQCSNI FEDLANLLSR SAFPVNSPLS ALNVLALDGL VAVIQAIAER TDHAHQHHGQ TVPEISEYFP FWQLKCEGSN DPDQWVRFVH QQKSIKRKLM
0401: VGVEHFNRDK KKGFEYLQGV HLLPEKLDPR SVALFFRYTP GLDKNLLGEY LGNHDEFSIL VLHEFAKTFD FEDMNLDAAL RLFLETFRLP GESQKIQRIL
0501: EAFSERYYEQ SPHMFVNRDA ALVLSYSVIM LNTDQHNVRV KKKMTEEDFI RNNRRINGGN DLPREFLSEL FYSICRNEIK TIPEQGAGCS EMSYSRWVDL
0601: MWKSKRTSVY IACDSYPFLD NDMFPIMAGP SVAAISVVFD NVEHEEILTG CIDGFLSVAK LAAFYHLDDV LNDLVVGLCK FTTLLNNSYA DDPVIAFGVD
0701: TKARMATEAV FTIATTYGDH IRSGWRNIVD CILRLHKIGL LPGRLTGDTG DDQESSSDSL PSKLGSYALA PQALPINTPK KTYGLMGRFS QLLYLDAEEP
0801: RSQPTEEQLA AQRNALETVK KCQIGTIFTE SKFLQADSLS NLARALIQAA GRPQRITSSL DDEGTAVFCL ELLITVTLNN RDRIVLLWQG VYEHITHIVQ
0901: STVMPCNLVE KAVFGLLHIC QRLLPYKENL VDDLLRSLQL ILKLDARVAD AYCENITLEV TRLVKANATH IKSQMGWRTI ISLLCVTARH PDASDAGFEA
1001: LVFIMSEGAH LSPANFIVSV EASRQFAESR VGSSERSIHA LNLMADSVNC LTRWSREVKE AGGEADRILE GIAEMWLRLV QALRKVCTDQ REEVRNHALL
1101: CLHRCLIVDG ISVSSSAWLM SFDIIFQLLD ELLEIAQSYS PKDFRNMEVS LLHAVKLLCK VFLQSLKDLS AQSSFSKLWL EVLDMIEKFM KVKLRGRRTE
1201: KLHEAIPELL KNILLVMKAN GVLSKTSASE ENTLWEATWL QVNKVAPSLQ PEVFPDNESD SAAEGEQSKP ESSAQEGQTA EQ
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.