Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74452 | Canola | cytosol | 99.86 | 99.86 |
| AT5G39500.1 | Thale cress | cytosol | 87.58 | 86.97 |
| Bra028434.1-P | Field mustard | cytosol, plasma membrane, plastid | 93.3 | 79.82 |
| Bra019694.1-P | Field mustard | cytosol | 63.36 | 62.71 |
| PGSC0003DMT400003631 | Potato | cytosol | 61.97 | 62.67 |
| Solyc02g088290.2.1 | Tomato | cytosol | 61.55 | 62.55 |
| Solyc02g067010.2.1 | Tomato | cytosol | 61.34 | 60.7 |
| Bra002249.1-P | Field mustard | cytosol | 36.22 | 37.8 |
| Bra011611.1-P | Field mustard | plastid | 20.8 | 17.56 |
| Bra032659.1-P | Field mustard | cytosol, plastid | 21.42 | 17.52 |
| Bra014466.1-P | Field mustard | cytosol | 21.49 | 17.41 |
| Bra033555.1-P | Field mustard | plastid | 18.91 | 16.05 |
| Bra019446.1-P | Field mustard | cytosol | 17.79 | 14.6 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | EnsemblPlantsGene:Bra040986 | EnsemblPlants:Bra040986.1 | EnsemblPlants:Bra040986.1-P |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032012 | GO:GO:0065009 | InterPro:IPR000904 |
| InterPro:IPR023394 | UniProt:M4FIQ7 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 | PANTHER:PTHR44190 |
| PANTHER:PTHR44190:SF1 | SMART:SM00222 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom |
| InterPro:Sec7_dom_sf | UniParc:UPI000253EB54 | SEG:seg | : | : | : |
Description
AT5G39500 (E=0.0) | pattern formation protein, putative
Coordinates
chrScaffold000355:+:10436..14966
Molecular Weight (calculated)
160428.0 Da
IEP (calculated)
5.089
GRAVY (calculated)
-0.043
Length
1433 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGYQNHHPSG SRNSFHGGEF NKPSKVAVAS MINSEIGAVL AVMRRNVRWG VRYIADDDQL EHSLIHSLKE LRKQIFSWQS NWQNVDPKLY IQPFLDVILS
0101: DETGAPITGV ALSSVYKILT LDVFTLDTVN VGEAMHIIVD AVKSCRFEVT DPASEEVVLM KILQVLLACI KCKAASGLSN QDICTIVNTC LRVVHQSSSK
0201: SELLQRIARH TMHELVRCIF SQLPYISQLA NESELPVGDK VGTVEWDQNS GENTVENGSI DTLGVEKDSP SSEMVIPETV LKKDEKGAEV SDDLNVAANG
0301: ENAMLAPFGI PCMVEIFHFL CTLLNIGENS EVNSRSNPIA FDEDVPLFAL GLINSAIELG GSSFREHPKL LSLIQDELFC NLMQFGMSMS PLILSTVCSI
0401: VLNLYLTLRT ELKVQLEAFF SCVLLRIAQS KHGSSYQQQE VAMEALVDFC RQHTFMAEMF ANFDCDITCS NVFEDVSNLL SKSAFPVNGP LSAMHIIALD
0501: GLISMVQGMA ERVGEELPGS NVSTHEEGYE AFWTVRCENY GDPNLWVPFV RKSKHIKKKL MVGADHFNSD PKKGLQQLQA MHLLPEELDP KSVACFFRYT
0601: CGIDKNLIGD FLGNHDQFCV QVLHEFAKTF DFQNMNLDNA LRLFVGTFRL PGESQKIQRV LEAFSERYYE QSPQILIDKD AALLLSYSII LLNTDHHNTQ
0701: VKKKMTEEDF IRNNRCINGG ADLPREYLSE LYHSICDSEI QMIPDQGTGF QMMTSSRWIS VIYKSKETSP YIICDSASYL DRDMFHIVSG PTIAATSVVF
0801: EQAEQEDVLQ RCVDGLLAIA KLSAYYHLNS VLDDLVVSLC KFTPFFASLS VDEAVLAIGE DARARMATES VFLIANKYGD YITSGWKNIL ECVLSLHKLQ
0901: ILPAHIASDA ADDPEEERPL ANPLSVVSQV QPSETPRKSS SFIGRFSQLL SFDMEETKPL LPTEEELAAY KHARGIVKDC HIDSIFSDSK FLQAESLQQL
1001: VNSLIKAAAK DKASAVFCLE LLIAVTLNNR DRILLIWQTV YEHISGIVQS TATPCPLVEK AVFGVLKICQ RLLPYKENLT DELLKLLQLV LKLDARVADA
1101: YCEPITQEVA RLVKANASHV RSHVGWRTII SLISITARHP EASDAGFEAL RFIMSEGAHL LLANYILCSD AARQFAESRV GEIDRSISAI DLMSNSVFCL
1201: ARWSQEAKNS VGEDEAMRKL SQDVGEMWLR LVNNLKSVCL DQRDQVRNHA ISMLQRSIAG ADGIMLPQPI WFQCFDAAIF PLLDELLAVS IENSRKTFKK
1301: TVEETLVLAT KLMSKAFLQA LQDISQQPSF CRLWLGVLDR METYMSTKFR GKRSEKVHEL IPELLKNTLL VMKTTGVLLP GDDIGSDSFW QLTWLHVKKI
1401: SPSLQSEVFP QEELDQFQRR NAKPEDTPVV PEN
0101: DETGAPITGV ALSSVYKILT LDVFTLDTVN VGEAMHIIVD AVKSCRFEVT DPASEEVVLM KILQVLLACI KCKAASGLSN QDICTIVNTC LRVVHQSSSK
0201: SELLQRIARH TMHELVRCIF SQLPYISQLA NESELPVGDK VGTVEWDQNS GENTVENGSI DTLGVEKDSP SSEMVIPETV LKKDEKGAEV SDDLNVAANG
0301: ENAMLAPFGI PCMVEIFHFL CTLLNIGENS EVNSRSNPIA FDEDVPLFAL GLINSAIELG GSSFREHPKL LSLIQDELFC NLMQFGMSMS PLILSTVCSI
0401: VLNLYLTLRT ELKVQLEAFF SCVLLRIAQS KHGSSYQQQE VAMEALVDFC RQHTFMAEMF ANFDCDITCS NVFEDVSNLL SKSAFPVNGP LSAMHIIALD
0501: GLISMVQGMA ERVGEELPGS NVSTHEEGYE AFWTVRCENY GDPNLWVPFV RKSKHIKKKL MVGADHFNSD PKKGLQQLQA MHLLPEELDP KSVACFFRYT
0601: CGIDKNLIGD FLGNHDQFCV QVLHEFAKTF DFQNMNLDNA LRLFVGTFRL PGESQKIQRV LEAFSERYYE QSPQILIDKD AALLLSYSII LLNTDHHNTQ
0701: VKKKMTEEDF IRNNRCINGG ADLPREYLSE LYHSICDSEI QMIPDQGTGF QMMTSSRWIS VIYKSKETSP YIICDSASYL DRDMFHIVSG PTIAATSVVF
0801: EQAEQEDVLQ RCVDGLLAIA KLSAYYHLNS VLDDLVVSLC KFTPFFASLS VDEAVLAIGE DARARMATES VFLIANKYGD YITSGWKNIL ECVLSLHKLQ
0901: ILPAHIASDA ADDPEEERPL ANPLSVVSQV QPSETPRKSS SFIGRFSQLL SFDMEETKPL LPTEEELAAY KHARGIVKDC HIDSIFSDSK FLQAESLQQL
1001: VNSLIKAAAK DKASAVFCLE LLIAVTLNNR DRILLIWQTV YEHISGIVQS TATPCPLVEK AVFGVLKICQ RLLPYKENLT DELLKLLQLV LKLDARVADA
1101: YCEPITQEVA RLVKANASHV RSHVGWRTII SLISITARHP EASDAGFEAL RFIMSEGAHL LLANYILCSD AARQFAESRV GEIDRSISAI DLMSNSVFCL
1201: ARWSQEAKNS VGEDEAMRKL SQDVGEMWLR LVNNLKSVCL DQRDQVRNHA ISMLQRSIAG ADGIMLPQPI WFQCFDAAIF PLLDELLAVS IENSRKTFKK
1301: TVEETLVLAT KLMSKAFLQA LQDISQQPSF CRLWLGVLDR METYMSTKFR GKRSEKVHEL IPELLKNTLL VMKTTGVLLP GDDIGSDSFW QLTWLHVKKI
1401: SPSLQSEVFP QEELDQFQRR NAKPEDTPVV PEN
0001: MGYQNHPSGS NSFHGEFKRC HSKPSKGAVA SMINSEIGAV LAVMRRNVRW GVRYIADDDQ LEHSLIHSLK ELRKQIFSWQ SNWQYVDPRL YIQPFLDVIL
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
Arabidopsis Description
GNL1ARF guanine-nucleotide exchange factor GNL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.