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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plastid 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:mitochondrion
Plant-mPloc:nucleus
PProwler:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH13998 Soybean plastid 53.83 13.13
KRH74111 Soybean plastid 53.35 12.96
CDY59102 Canola cytosol, mitochondrion, plastid 51.44 12.69
VIT_03s0038g04090.t01 Wine grape mitochondrion, plasma membrane, plastid 50.96 12.51
Bra033555.1-P Field mustard plastid 50.48 12.5
CDY54791 Canola mitochondrion, nucleus, plastid 50.48 12.46
AT4G38200.1 Thale cress cytosol, mitochondrion, plastid 50.24 12.45
GSMUA_Achr1P09290_001 Banana mitochondrion 47.61 11.96
CDX75498 Canola mitochondrion, plasma membrane, plastid 47.13 11.67
CDX69135 Canola plastid 47.13 11.67
Bra011611.1-P Field mustard plastid 47.13 11.61
AT4G35380.1 Thale cress cytosol, plasma membrane, plastid 46.17 11.31
HORVU7Hr1G093440.3 Barley plastid 41.39 10.27
TraesCS7D01G392600.1 Wheat cytosol, plasma membrane, plastid 40.91 10.12
KXG29692 Sorghum plastid 40.91 10.09
TraesCS7A01G398300.1 Wheat cytosol, plastid 40.67 10.05
Zm00001d053688_P002 Maize plastid 40.43 9.98
TraesCS6A01G168000.1 Wheat plastid 39.95 9.93
TraesCS6B01G195700.1 Wheat plastid 39.95 9.93
TraesCS6D01G157000.1 Wheat plastid 39.95 9.93
HORVU6Hr1G034130.6 Barley plastid 39.95 9.91
Zm00001d046717_P009 Maize plastid 40.43 9.85
OQU76719 Sorghum plastid 35.41 8.89
TraesCS7B01G299100.1 Wheat cytosol 35.41 8.75
Solyc01g091460.2.1 Tomato extracellular 34.69 8.16
Solyc12g017830.1.1 Tomato plastid 21.05 4.97
Solyc05g013040.2.1 Tomato cytosol 17.22 4.97
Solyc04g005560.2.1 Tomato nucleus 16.75 4.85
Solyc02g067010.2.1 Tomato cytosol 16.27 4.7
Solyc02g088290.2.1 Tomato cytosol 15.79 4.68
Solyc03g070470.1.1 Tomato nucleus 13.64 3.72
Solyc01g112350.2.1 Tomato extracellular, golgi, plasma membrane 4.31 1.31
Os06t0622800-01 Rice plasma membrane 0.0 0.0
GSMUA_Achr8P34520_001 Banana cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc01g112340.2.1EnsemblPlantsGene:Solyc01g112340.2InterPro:DCB_domPANTHER:PTHR10663PANTHER:PTHR10663:SF108PFAM:PF16213
SEG:segUniParc:UPI0002767C9FUniProt:K4B495MapMan:35.1::
Description
No Description!
Coordinates
chr1:+:98423129..98424628
Molecular Weight (calculated)
46482.5 Da
IEP (calculated)
4.887
GRAVY (calculated)
-0.082
Length
418 amino acids
Sequence
(BLAST)
001: MSASQALGGP SRCGWVLGPS LDKIIKNVAW RKHSQLVAAC KSALDKLDSV VDDPVDPASC TPLYGLSTSD ADFVLQPLIM ALDSSSPKVV EPALDCSFRL
101: FSLGLIRCEI DTPTPTPSPS HNPSSHSHIF RLIDSVCKCG ALGDEAIELA VLRVLLSAIR SPYVLVRGDC LVHIVRSCYN VYLGGMNGTN QICAKSVLAQ
201: MMIIVFTRVE ENSMIVDFKT VSVAELLEFT DRNLNEGSSI QIAQNFLNEI VDVKSKEGIA ESKLCLQLEN DNSEKKGELI DGEPGEGADL SGYSKIREDG
301: FMLFKNLCKL SMKFSSQEHA DDNILLRGKV LSLELLKVIM DNAGPIWRSN ESTQWSAYWT ADHMARETSF VSREVNHCHQ FDNNFFQFLN NWKFYSFFVY
401: NENLVNKYDS LPPIEENL
Best Arabidopsis Sequence Match ( AT4G38200.1 )
(BLAST)
0001: MSSSQNLGGA TRCGRVIGPS LDKIIKNAAW RKHTFLVSAC KSVLDKLEAL SDSPDPSSPL FGLTTSDADA VLQPLLLSLD TGYAKVIEPA LDCSFKLFSL
0101: SLLRGEVCSS SPDSLLYKLI HAICKVCGIG EESIELAVLR VLLAAVRSPR ILIRGDCLLH LVRTCYNVYL GGFNGTNQIC AKSVLAQIML IVFTRSEANS
0201: MDASLKTVNV NDLLAITDKN VNEGNSVHIC QGFINDVITA GEAAPPPDFA LVQPPEEGAS STEDEGTGSK IREDGFLLFK NLCKLSMKFS SQENTDDQIL
0301: VRGKTLSLEL LKVIIDNGGP IWLSDERFLN AIKQLLCLSL LKNSALSVMS IFQLQCAIFT TLLRKYRSGM KSEVGIFFPM LVLRVLENVL QPSFVQKMTV
0401: LSLLENICHD PNLIIDIFVN FDCDVESPNI FERIVNGLLK TALGPPPGSS TILSPVQDIT FRHESVKCLV SIIKAMGTWM DQQLSVGDSL LPKSLENEAP
0501: ANNHSNSNEE DGTTIDHDFH PDLNPESSDA ATLEQRRAYK IERQKGVTLF NRKPSKGIEF LISSKKVGNS PDEVVSFLRN TTGLNATMIG DYLGEREDFP
0601: MKVMHAYVDS FDFKEMNFGE AIRFFLRGFR LPGEAQKIDR IMEKFAERFC KCNPNSFSSA DTAYVLAYSV IMLNTDAHNI MVKEKMTKAD FIRNNRGIDD
0701: GKDLPEEYLG ALYDQVVINE IKMSSDSSAP ESRQSNGLNK LLGLDGILNL VYWTQTEEKA VGANGLLIKD IQEKFRSKSG KSESAYHVVT DVAILRFMVE
0801: VSWGPMLAAF SVTLDQSDDR LAAVECLRGF RYAVHVTAVM GMQTQRDAFV TSMAKFTNLH CAGDMKQKNV DAVKAIISIA IEDGNHLQDA WEHILTCLSR
0901: IEHLQLLGEG APSDASYFAS TETEEKKALG FPNLKKKGAL QNPVMMAVVR GGSYDSSTIG PNMPGLVKQD QINNFIANLN LLDQIGSFQL NNVYAHSQRL
1001: KTEAIVAFVK ALCKVSMSEL QSPTDPRVFS LTKLVEIAHY NMNRIRLVWS RIWSILSDFF VSVGLSENLS VAIFVMDSLR QLSMKFLERE ELANYNFQNE
1101: FLRPFVIVMQ KSSSAEIREL IVRCISQMVL SRVSNVKSGW KSVFKVFTTA AADERKNIVL LAFETMEKIV REYFSYITET EATTFTDCVR CLITFTNSTF
1201: TSDVSLNAIA FLRFCALKLA DGGLVWNEKG RSSSPSTPVT DDHSPSTQNF MDADENISYW VPLLTGLSKL TSDSRSAIRK SSLEVLFNIL KDHGHIFSRT
1301: FWIGVFSSVI YPIFNSVWGE NDLLSKDEHS SFPSTFSSHP SEVSWDAETS AMAAQYLVDL FVSFFTVIRS QLSSVVSLLA GLIRSPAQGP TVAGVGALLR
1401: LADELGDRFS ENEWKEIFLA VNEAASLTLS SFMKTLRTMD DIPDEDTLSD QDFSNEDDID EDSLQTMSYV VARTKSHITV QLQVVQVVTD LYRIHQQSLL
1501: ASHVTVILEI LSSISSHAHQ LNSDLILQKK VRRACSILEL SEPPMLHFEN DTFQNYLDIL QAIVTNNPGV SLELNVESQL MTVCMQILKM YLKCTLFQGD
1601: ELEETRQPKN WILPMGAASK EEAAARSPLV VAVLKALREL KRDSFKRYAP NFFPLLVELV RSEHSSSQVP QVLSTVFHTC MGAMMDE
Arabidopsis Description
BIG1Brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Source:UniProtKB/Swiss-Prot;Acc:F4JSZ5]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.