Factsheet for VIT_03s0038g04090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 3
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g112350.2.1	Tomato	extracellular, golgi, plasma membrane	61.34	76.09
KRH13998	Soybean	plastid	74.5	73.98
KRH74111	Soybean	plastid	74.38	73.56
GSMUA_Achr8P34520_001	Banana	cytosol	9.22	70.4
AT4G38200.1	Thale cress	cytosol, mitochondrion, plastid	68.51	69.12
CDY59102	Canola	cytosol, mitochondrion, plastid	67.74	68.06
CDY54791	Canola	mitochondrion, nucleus, plastid	67.57	67.89
Bra033555.1-P	Field mustard	plastid	66.57	67.12
GSMUA_Achr1P09290_001	Banana	mitochondrion	63.75	65.2
CDX69135	Canola	plastid	63.75	64.28
CDX75498	Canola	mitochondrion, plasma membrane, plastid	63.45	63.98
Bra011611.1-P	Field mustard	plastid	63.28	63.46
HORVU6Hr1G034130.6	Barley	plastid	62.81	63.4
KXG29692	Sorghum	plastid	63.04	63.3
TraesCS6D01G157000.1	Wheat	plastid	62.51	63.26
AT4G35380.1	Thale cress	cytosol, plasma membrane, plastid	63.4	63.25
TraesCS6B01G195700.1	Wheat	plastid	62.46	63.2
TraesCS6A01G168000.1	Wheat	plastid	62.46	63.2
Zm00001d053688_P002	Maize	plastid	62.81	63.14
HORVU7Hr1G093440.3	Barley	plastid	60.75	61.37
TraesCS7D01G392600.1	Wheat	cytosol, plasma membrane, plastid	60.81	61.28
TraesCS7A01G398300.1	Wheat	cytosol, plastid	60.87	61.27
OQU76719	Sorghum	plastid	59.75	61.12
Zm00001d046717_P009	Maize	plastid	61.1	60.61
TraesCS7B01G299100.1	Wheat	cytosol	59.17	59.52
Os06t0622800-01	Rice	plasma membrane	23.15	57.86
VIT_15s0048g00800.t01	Wine grape	cytosol	54.52	52.16
Solyc01g112340.2.1	Tomato	plastid	12.51	50.96
VIT_11s0016g00170.t01	Wine grape	cytosol, plastid	33.43	31.66
VIT_02s0012g01790.t01	Wine grape	cytosol	18.74	21.7
VIT_11s0016g04100.t01	Wine grape	cytosol	16.39	20.07

Protein Annotations

Gene3D:1.10.1000.11	Gene3D:1.10.220.20	EntrezGene:100250471	wikigene:100250471	MapMan:22.3.3.2	InterPro:ARM-type_fold
ProteinID:CCB60515	ProteinID:CCB60515.1	InterPro:DCB_dom	UniProt:F6I0P9	EMBL:FN596508	GO:GO:0003674
GO:GO:0003676	GO:GO:0005086	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015074	GO:GO:0016020	GO:GO:0016021	GO:GO:0032012	GO:GO:0065009	InterPro:IPR000904
InterPro:IPR023394	EntrezGene:LOC100250471	wikigene:LOC100250471	InterPro:Mon2_C	PFAM:PF01369	PFAM:PF09324
PFAM:PF12783	PFAM:PF16206	PFAM:PF16213	PFscan:PS50190	PANTHER:PTHR10663	PANTHER:PTHR10663:SF108
SMART:SM00222	SUPFAM:SSF48371	SUPFAM:SSF48425	InterPro:Sec7_C	InterPro:Sec7_C_sf	InterPro:Sec7_N
InterPro:Sec7_dom	InterPro:Sec7_dom_sf	TIGR:TC53518	TIGR:TC54717	TIGR:TC63375	UniParc:UPI0001982F79
ArrayExpress:VIT_03s0038g04090	EnsemblPlantsGene:VIT_03s0038g04090	EnsemblPlants:VIT_03s0038g04090.t01	unigene:Vvi.1050	RefSeq:XP_002280001	RefSeq:XP_002280001.1
RefSeq:XP_010645628.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:2943477..2962559

Molecular Weight (calculated)

188509.0 Da

IEP (calculated)

5.263

GRAVY (calculated)

0.051

Length

1702 amino acids

Sequence
(BLAST)

0001: MSVSLGGSSR AGRVLGPSLD KIIKNVAWRK HSQLVAACKS VLDKLETLAD SSDPNSNSPV FGLSVSDAEF VLQPLLLALD SASAKVMEPA LECLFKLCSL
0101: GLIRGVIDRK GMIDAVCKSA GSGEDAVDLA VLKVLLSAVR SPCVYIRGEC LVHIVKTCYN VYLGSVSGTN QICAKAVLAQ IMLIVFARME EDSMEVGIRT
0201: VSVNELLEFT DRNLNEGNSI QIVQSFIYEV MEASEGNASP VVEVPNGSKG DGKTEVDNGE MENGAESSGE SVIREDGFLI FKNLCKLSMK FSSQDQSDDL
0301: ILLRGKILSL ELLKVVMNNG GPIWRSNERF LSAIKQFLCL SLLKNSALSV MIIFQLLCSI FMSLLSKFRS GLKEEIGIFF PMLILRVLEN VLQPSFLQKM
0401: TVLNILEKMS HDSHIIIDIF VNYDCDVNAP NIFERTVNGL LKTALGPPPG STTTLSPIQD LTFRLESVKC LVSIIKSMGA WMDQQLIIGD FSPPKSSESE
0501: ISTENHAIIN GEEGTIPDYE LHPETNSGLS DAAAFEQRRA YKLEFQKGIS LFNRKPSKGI EFLISSKKIG GSPEEVAAFL KNTAGLNETV IGDYLGERED
0601: FSLKVMHAYV DSFNFEALDF GEAIRFFLRG FRLPGEAQKI DRIMEKFAER YCKCNPNSFT SADTAYVLAY SVILLNTDAH NNMVKDKMTK ADFIRNNRGI
0701: DDGKDLPEEY LGAIYDHIVK NEIKMNADSS APQSKQANGF NKLLGLDGIF NLVNWKQTEE KPLGANGLLI KHIQEQFKAK SGKSESVYYA VTDVAILRFM
0801: VEVCWGPMLA AFSVTLDQSD DKVATSQCLQ GIRHAVHVTA VMGMQTQRDA FVTTVAKFTF LHCVADMKQK NVDAVKAIIA IAIEDGNFLQ EAWEHILTCL
0901: SRFEHLQLLG EGAPPDASFF TTSNIETDEK THKSAGFPSL KRRGTLQNPA VVAVVRGGSY DSTTLGVNTS NLVTPEQMNN FILNLHLLDQ IGSFELNHIF
1001: AHSQRLNSEA IVAFVKALCK VSMSELQSPT DPRVFSLTKI VEIAHYNMNR IRLVWSRIWN VLSDFFVSVG LSENLSVAIF VMDSLRQLAM KFLEREELAN
1101: YNFQNEFLRP FVIVMQKSNS TEIKELIVRC ISQMVLSRVN NVKSGWKSVF MVFTAAAADE RKNIVLLAFE TMEKIVREYF PYITETETTT FTDCVRCLIT
1201: FTNSRFNSDV SLNAIAFLRF CAVKLAEGGL VCNERSEEGD SSTPPVDKDA SDGQLFTDRD DHASYWIPLL TGLSKLTSDP RSAIRKSSLE VLFNILKDHG
1301: HLFSRTFWAG VFSLVVFPIF NFVSDKGGTD ANNDQVLQAS RPPHPDVGTW DSETSAVAAQ CLVDLFVSFF NVVRSQLLAV VSILTGFIKS PVQAPASTGV
1401: TALVRLADDL SSRLSEDEWK AIFIALKEVT ASTLPRFSKV ITIMDDMEVP EVSQASPDLE MLSDNGLTND DIGDDTLQTA AYVVSRMKSH IAMQLLIIQV
1501: ATDIYKICRQ AFLASIITIL TETFSMIASH AHQLNSEKML LMKLQKACSI LEISEPPVVH FENESYQNYL NFLQHLVMDN PSVAEELNIE QQLVGVCEKI
1601: LQIYLNCAGL QNAPQKQSSQ PVLHWILPLG SAQKDELAAR TSLAVSALQV LGGLGTDSFR KYISQFFPLL VDLVRSEHSS GDIQRVLSYM FQSCIGPIIM
1701: KL

Best Arabidopsis Sequence Match ( AT4G38200.1 )
(BLAST)

0001: MSSSQNLGGA TRCGRVIGPS LDKIIKNAAW RKHTFLVSAC KSVLDKLEAL SDSPDPSSPL FGLTTSDADA VLQPLLLSLD TGYAKVIEPA LDCSFKLFSL
0101: SLLRGEVCSS SPDSLLYKLI HAICKVCGIG EESIELAVLR VLLAAVRSPR ILIRGDCLLH LVRTCYNVYL GGFNGTNQIC AKSVLAQIML IVFTRSEANS
0201: MDASLKTVNV NDLLAITDKN VNEGNSVHIC QGFINDVITA GEAAPPPDFA LVQPPEEGAS STEDEGTGSK IREDGFLLFK NLCKLSMKFS SQENTDDQIL
0301: VRGKTLSLEL LKVIIDNGGP IWLSDERFLN AIKQLLCLSL LKNSALSVMS IFQLQCAIFT TLLRKYRSGM KSEVGIFFPM LVLRVLENVL QPSFVQKMTV
0401: LSLLENICHD PNLIIDIFVN FDCDVESPNI FERIVNGLLK TALGPPPGSS TILSPVQDIT FRHESVKCLV SIIKAMGTWM DQQLSVGDSL LPKSLENEAP
0501: ANNHSNSNEE DGTTIDHDFH PDLNPESSDA ATLEQRRAYK IERQKGVTLF NRKPSKGIEF LISSKKVGNS PDEVVSFLRN TTGLNATMIG DYLGEREDFP
0601: MKVMHAYVDS FDFKEMNFGE AIRFFLRGFR LPGEAQKIDR IMEKFAERFC KCNPNSFSSA DTAYVLAYSV IMLNTDAHNI MVKEKMTKAD FIRNNRGIDD
0701: GKDLPEEYLG ALYDQVVINE IKMSSDSSAP ESRQSNGLNK LLGLDGILNL VYWTQTEEKA VGANGLLIKD IQEKFRSKSG KSESAYHVVT DVAILRFMVE
0801: VSWGPMLAAF SVTLDQSDDR LAAVECLRGF RYAVHVTAVM GMQTQRDAFV TSMAKFTNLH CAGDMKQKNV DAVKAIISIA IEDGNHLQDA WEHILTCLSR
0901: IEHLQLLGEG APSDASYFAS TETEEKKALG FPNLKKKGAL QNPVMMAVVR GGSYDSSTIG PNMPGLVKQD QINNFIANLN LLDQIGSFQL NNVYAHSQRL
1001: KTEAIVAFVK ALCKVSMSEL QSPTDPRVFS LTKLVEIAHY NMNRIRLVWS RIWSILSDFF VSVGLSENLS VAIFVMDSLR QLSMKFLERE ELANYNFQNE
1101: FLRPFVIVMQ KSSSAEIREL IVRCISQMVL SRVSNVKSGW KSVFKVFTTA AADERKNIVL LAFETMEKIV REYFSYITET EATTFTDCVR CLITFTNSTF
1201: TSDVSLNAIA FLRFCALKLA DGGLVWNEKG RSSSPSTPVT DDHSPSTQNF MDADENISYW VPLLTGLSKL TSDSRSAIRK SSLEVLFNIL KDHGHIFSRT
1301: FWIGVFSSVI YPIFNSVWGE NDLLSKDEHS SFPSTFSSHP SEVSWDAETS AMAAQYLVDL FVSFFTVIRS QLSSVVSLLA GLIRSPAQGP TVAGVGALLR
1401: LADELGDRFS ENEWKEIFLA VNEAASLTLS SFMKTLRTMD DIPDEDTLSD QDFSNEDDID EDSLQTMSYV VARTKSHITV QLQVVQVVTD LYRIHQQSLL
1501: ASHVTVILEI LSSISSHAHQ LNSDLILQKK VRRACSILEL SEPPMLHFEN DTFQNYLDIL QAIVTNNPGV SLELNVESQL MTVCMQILKM YLKCTLFQGD
1601: ELEETRQPKN WILPMGAASK EEAAARSPLV VAVLKALREL KRDSFKRYAP NFFPLLVELV RSEHSSSQVP QVLSTVFHTC MGAMMDE

Arabidopsis Description

BIG1Brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Source:UniProtKB/Swiss-Prot;Acc:F4JSZ5]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.