CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G349900.1	Wheat	cytosol	87.33	86.94
TraesCS7B01G254000.2	Wheat	cytosol	86.88	86.1
KXG20307	Sorghum	cytosol	41.63	83.64
KXG32999	Sorghum	cytosol	80.54	80.54
EES01060	Sorghum	cytosol	78.73	79.09
KXG22580	Sorghum	cytosol, nucleus	29.41	68.42
HORVU7Hr1G084420.4	Barley	cytosol	86.43	66.09
OQU76666	Sorghum	cytosol	60.63	65.69

Protein Annotations

MapMan:23.5.1.4	Gene3D:3.40.50.300	EntrezGene:8082248	UniProt:C5Z5K8	EnsemblPlants:EER88605	ProteinID:EER88605
ProteinID:EER88605.1	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF5	InterPro:Ran_GTPase
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3010G182700	SUPFAM:SSF52540
unigene:Sbi.7712	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A89393	RefSeq:XP_002437238.1

Description

hypothetical protein

Coordinates

chr10:+:52232063..52234640

Molecular Weight (calculated)

25076.0 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.376

Length

221 amino acids

Sequence
(BLAST)

001: MALPNTPPVD FPSFKLVLVG DGGTGKTTYV KRHITGEFEK RYEPTIGVEV RPLDFTTSHG KIRFYCWDTA GQEKFGGLRD GYYINGQCAI IMFDVTSRIT
101: YKNVPTWHRD ISRVCENIPV VLCGNKVDVK NRQVKAKAVT YHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGNMDVKFV EELALVPADV TIDVAAQQQI
201: DKEIELAAAI PLPDEDDDNM D

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.