Factsheet for TraesCS4B01G102600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G213200.1	Wheat	cytosol, mitochondrion, nucleus	94.69	94.69
TraesCS4D01G100000.1	Wheat	cytosol	92.36	92.36
HORVU4Hr1G044060.1	Barley	cytosol	71.76	83.25
Os11t0200000-01	Rice	cytosol	56.9	58.77
TraesCS6B01G210200.1	Wheat	cytosol	42.25	43.45
TraesCS2B01G309700.1	Wheat	cytosol	38.85	42.56
TraesCS6B01G212600.3	Wheat	nucleus	46.5	42.12
TraesCS7B01G261800.1	Wheat	nucleus	45.22	41.04
TraesCS7B01G266000.1	Wheat	plastid	18.68	24.93
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	17.62	21.12
TraesCS3B01G318000.1	Wheat	cytoskeleton, cytosol, nucleus	16.56	20.53
TraesCS1B01G329500.1	Wheat	cytosol	16.77	20.26
TraesCS5B01G121300.1	Wheat	vacuole	16.14	16.78
TraesCS5B01G072100.1	Wheat	nucleus	17.2	13.19
TraesCS2B01G204100.1	Wheat	cytosol	19.32	13.13

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF126
SUPFAM:SSF52768	EnsemblPlantsGene:TraesCS4B01G102600	EnsemblPlants:TraesCS4B01G102600.1	InterPro:Ureohydrolase_dom_sf	TIGR:cd09991	SEG:seg

Description

No Description!

Coordinates

chr4B:-:108670269..108671813

Molecular Weight (calculated)

51450.4 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.364

Length

471 amino acids

Sequence
(BLAST)

001: MGANSLPSPS CPDGRKRRVC YYYDPGISNV DYGEGHSMVP RRVAMTHGLV ASYGLLNHMT RLRTRPASPE ELLAFHDQKY VDLLGRLTPA GYISDADLRR
101: TAEEHGIGPV RRWDGTYTND NPAIEGLMGY CLSYAGGSLA AARALCRGDH DVAINWSGGM HHACRGHANG FCYVNDIVLA IKQLLGRFPR VLYVDIDAHH
201: GDGVEKAFVD SNQVMTLSFH QYESQFFPGT GSIDDVGEGA GRYHALNVPL KKGMDDQGYH ELFKPIVGKA MQVFQPDAVV LQCGADSLSG DRLAGLELSV
301: GGHAECVKYL RGFNAPLLLL GGGGYTINHV ASCWCYETAV AVGKEDEIAD EIPHHPYDHY YRSQGYKLQC RTEAPGSRSS GENKDAAAIR VKALEHLSAI
401: NCAPSIQFHE PCAAAAQGMD VDDLCHDDDE DDDEEEEDPM ERLHRLCDNA DLAGFFVELG RKHSLSSSAM G

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.