Factsheet for Zm00001d052750_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14344	Sorghum	nucleus	93.22	92.72
Zm00001d034965_P002	Maize	nucleus	86.72	86.02
TraesCS7D01G326300.2	Wheat	nucleus	60.7	65.5
TraesCS7B01G230100.2	Wheat	nucleus	60.16	64.72
TraesCS7A01G329600.1	Wheat	nucleus	60.43	64.64
HORVU7Hr1G078770.5	Barley	nucleus	60.16	63.61
Os08t0101000-01	Rice	nucleus	57.72	58.84
GSMUA_Achr3P00120_001	Banana	nucleus	17.62	35.91
Zm00001d001838_P001	Maize	nucleus	32.79	27.56
VIT_10s0071g00270.t01	Wine grape	nucleus	21.68	26.23
Zm00001d011712_P001	Maize	mitochondrion	18.97	17.86
Zm00001d042396_P003	Maize	nucleus	21.95	11.72
Zm00001d022440_P005	Maize	plastid	15.72	6.02
Zm00001d006597_P003	Maize	plastid	14.63	5.6
Zm00001d021790_P010	Maize	nucleus	14.63	5.58
Zm00001d007173_P003	Maize	mitochondrion, nucleus	14.36	5.24
Zm00001d045970_P001	Maize	mitochondrion	2.44	3.49
Zm00001d037893_P001	Maize	mitochondrion	2.44	3.21
Zm00001d012162_P002	Maize	mitochondrion	1.36	2.82
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	2.17	2.73
Zm00001d029836_P001	Maize	plastid	0.27	1.14

Protein Annotations

EntrezGene:100272565	MapMan:15.5.5.5	Gene3D:2.40.330.10	ProteinID:AQK57947.1	InterPro:B3_DNA-bd	UniProt:B4FPB4
EMBL:BT038952	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PANTHER:PTHR31140	PANTHER:PTHR31140:SF12	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI00017B7D69	EnsemblPlantsGene:Zm00001d052750	EnsemblPlants:Zm00001d052750_P001	EnsemblPlants:Zm00001d052750_T001	SEG:seg	:

Description

ABI3-VP1-transcription factor 47B3 domain-containing transcription factor LEC2

Coordinates

chr4:+:199667552..199671247

Molecular Weight (calculated)

40031.8 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.575

Length

369 amino acids

Sequence
(BLAST)

001: MGQMGGPDGD GDGGAGPHHQ YHYQALLAAV QNPSQGLHPF PLPFHVPLHA GAGAPAAGPG PGADADASTH NANAAHHSQP PRGFTDWSAS NSAFAAVASQ
101: PAPATTNTPF HYNLSQSYAL WTHYMLNKNV SYSTYPTPHE EHPHPLRHTH IQENPHPLRH THIPDKDSGC ASSLGFDSFT TMSLGPNICS HMTPMEGSIS
201: AKEPENSEDL PAIVRSSDEM DTRNSGKVHR DTVGTLPESK QSHESCASVN NKFNSGEYQV ILRKELTKSD VANSGRIVLP KKDAEAGLPP LVQGDPLILQ
301: MDDMVLPIIW KFKYRFWPNN KSRMYILEAA GEFVKTHGLQ AGDALIIYKN SVPGKFIIRG EKSIQQTNP

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.