Factsheet for Os09t0434200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0911700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	Os01t0911700-02	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G042090.3	Barley	cytosol	31.55	87.6
TraesCS5B01G214500.2	Wheat	cytosol	78.57	81.73
TraesCS5D01G223800.1	Wheat	cytosol	78.27	81.42
TraesCS5A01G216000.1	Wheat	cytosol	78.27	81.42
HORVU5Hr1G062970.1	Barley	cytosol	77.08	80.19
EER98955	Sorghum	cytosol	75.0	77.78
Zm00001d005795_P002	Maize	cytosol	73.51	76.23
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	59.82	60.91
CDY04094	Canola	cytosol	23.51	56.43
Bra017440.1-P	Field mustard	cytosol	23.51	56.43
VIT_04s0008g02290.t01	Wine grape	cytosol	48.21	55.29
KRH05327	Soybean	cytosol, mitochondrion, nucleus	50.6	54.31
PGSC0003DMT400019033	Potato	cytosol	49.11	53.05
Solyc08g067290.2.1	Tomato	cytosol	48.81	52.56
CDX70951	Canola	cytosol	45.83	50.0
VIT_04s0008g02310.t01	Wine grape	cytosol	13.1	50.0
AT5G20910.1	Thale cress	nucleus	44.94	48.71
CDX88834	Canola	cytosol	44.64	48.39
GSMUA_Achr4P09670_001	Banana	mitochondrion	35.42	47.41
KRH15708	Soybean	cytosol, nucleus, plastid	41.37	41.62
CDX87889	Canola	cytosol	28.87	39.59
Bra006585.1-P	Field mustard	cytosol	45.54	38.15

Protein Annotations

MapMan:11.1.2.3	Gene3D:3.30.40.10	UniProt:A0A0P0XNI1	ProteinID:BAT08235.1	ncoils:Coil	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009719	GO:GO:0009737	GO:GO:0009788
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os09g0434200	EnsemblPlants:Os09t0434200-01	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000393AF54	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

DELAYED SEED GERMINATION 1Similar to ABI3-interacting protein 2-1 protein. (Os09t0434200-01);Similar to ABI3-interacting protein 2-1 protein. (Os09t0434200-02)

Coordinates

chr9:-:15944581..15947917

Molecular Weight (calculated)

37463.3 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.565

Length

336 amino acids

Sequence
(BLAST)

001: NGETRGRACS RRGTTTMSAP AAVEQRLQAL RQKLGRKQHF EEAVADLAAA VRDHHAAASP ALRDLMYSTV CRVATVLQTR YTAPGFWRAG LNLFLGTEKL
101: VTNPSEKEQL KTFILRAREH LDEKENEESM PNNRETDTRF LFEGHLTVGP EPPPPAWLVA QNLARELSIL AEPSGDQGAN NNGESRAEEM APAAAIMNFL
201: NTMTVDGDLE AALEESLQNV MANPKVPPAS KEVVANLPVV TVTEEIIARL GKETQCAVCR ESLLVDDKMQ ELPCKHLFHP PCLKPWLDEN NSCPICRHEL
301: RTDDHVYESR KEREREEEED RKGAANAVRG GEFMYV

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.