Factsheet for HORVU5Hr1G062970.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G092690.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	HORVU3Hr1G092690.2	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G214500.2	Wheat	cytosol	97.52	97.52
TraesCS5D01G223800.1	Wheat	cytosol	97.21	97.21
TraesCS5A01G216000.1	Wheat	cytosol	97.21	97.21
HORVU6Hr1G042090.3	Barley	cytosol	35.91	95.87
EER98955	Sorghum	cytosol	82.66	82.41
Zm00001d005795_P002	Maize	cytosol	81.11	80.86
Os09t0434200-01	Rice	mitochondrion	80.19	77.08
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	63.47	62.12
Bra017440.1-P	Field mustard	cytosol	25.7	59.29
CDY04094	Canola	cytosol	25.7	59.29
KRH05327	Soybean	cytosol, mitochondrion, nucleus	53.87	55.59
VIT_04s0008g02290.t01	Wine grape	cytosol	49.85	54.95
Solyc08g067290.2.1	Tomato	cytosol	52.01	53.85
PGSC0003DMT400019033	Potato	cytosol	51.7	53.7
CDX70951	Canola	cytosol	49.85	52.27
AT5G20910.1	Thale cress	nucleus	48.92	50.97
CDX88834	Canola	cytosol	48.92	50.97
GSMUA_Achr4P09670_001	Banana	mitochondrion	38.39	49.4
VIT_04s0008g02310.t01	Wine grape	cytosol	13.31	48.86
KRH15708	Soybean	cytosol, nucleus, plastid	43.65	42.22
CDX87889	Canola	cytosol	29.72	39.18
Bra006585.1-P	Field mustard	cytosol	48.61	39.15

Protein Annotations

EMBL:AK361548	EMBL:AK365689	EnsemblPlants:HORVU5Hr1G062970.1	EnsemblPlantsGene:HORVU5Hr1G062970	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PFAM:PF13639
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002005D7A	UniProt:F2DCD1
MapMan:11.1.2.3	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DCD1]

Coordinates

chrchr5H:+:488740049..488744876

Molecular Weight (calculated)

36193.7 Da

IEP (calculated)

4.815

GRAVY (calculated)

-0.600

Length

323 amino acids

Sequence
(BLAST)

001: MSATAGDEAA VAERLEALRR KLGKKQHFEE AVADLTATLR DRYDGASPAL RESMYSTVCR VATVLQTRYT ASGFWRAGLN LFVATEKLLT NPAEKERLKT
101: CILRAREHLD EKENEESMPT NRQPDSRFLF EGHLTVGQEP PPPAWLVAQN LTRELNILAE PSGDQNGNNT RTELRPEEMT PAIMNFLNTL SGDADLESAL
201: EASLQGIAPQ PKVPPASKEV VANLPVVTVT EEVIARLGSE TECAVCRENL VVDDKMQELP CKHLFHPPCL KPWLDENNSC PICRHELRTD DHAYESRKER
301: EREEEEDRKG AANAVRGGEF MYI

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.