Factsheet for Bra022149.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra040510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47660.1	Bra040510.1-P	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28914	Canola	nucleus	99.48	99.48
Bra024925.1-P	Field mustard	nucleus	60.98	72.17
AT5G47660.1	Thale cress	nucleus	70.03	68.09
VIT_00s0956g00030.t01	Wine grape	nucleus	20.93	38.39
VIT_00s0259g00210.t01	Wine grape	nucleus	20.93	38.39
KRH36613	Soybean	nucleus	27.91	31.95
KRH11595	Soybean	nucleus	27.91	31.95
Solyc11g012720.1.1	Tomato	nucleus	27.91	26.73
PGSC0003DMT400034607	Potato	nucleus	26.36	26.22
Bra003702.1-P	Field mustard	nucleus	25.06	21.18
Bra008286.1-P	Field mustard	nucleus	26.87	20.12
Bra040010.1-P	Field mustard	nucleus	28.94	18.01
Bra015715.1-P	Field mustard	nucleus	26.61	17.94
Bra036731.1-P	Field mustard	nucleus	28.94	17.78
Bra015716.1-P	Field mustard	nucleus	24.81	17.42
Bra008285.1-P	Field mustard	nucleus	24.29	16.94
Bra003703.1-P	Field mustard	nucleus	24.55	15.5
Bra020607.1-P	Field mustard	nucleus	23.0	14.64
Bra009994.1-P	Field mustard	nucleus	22.22	14.1
Bra009518.1-P	Field mustard	nucleus	18.86	12.78
Bra005777.1-P	Field mustard	nucleus	18.09	12.22
Bra028824.1-P	Field mustard	nucleus	17.57	11.53

Protein Annotations

EnsemblPlants:Bra022149.1	EnsemblPlants:Bra022149.1-P	EnsemblPlantsGene:Bra022149	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	InterPro:SANT/Myb
ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF7	PFAM:PF13837	PFscan:PS50090	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000254630C	UniProt:M4E052	MapMan:15.5.20	:

Description

AT5G47660 (E=2e-122) | DNA-binding protein-related

Coordinates

chrA02:+:19677827..19679449

Molecular Weight (calculated)

44219.3 Da

IEP (calculated)

7.612

GRAVY (calculated)

-0.926

Length

387 amino acids

Sequence
(BLAST)

001: MELLAGNCRK RLADDDFAED VDPFGGSDWM YGGRSLRSQG NDDALATLAD LAPPPQKLKP IRCVVNKASL EDRHPLDILA GSLDRLPEMG FLEDFDAPLG
101: SKIADVEESG LLTRGVGKGL RFETEVQGQI HGTSRDGVSL SPSFDSDSEG DSSQGVGKAV TGKRKRQSRE KREHFMEKLV GKMMRRQEKL HNQLINVMEK
201: MERERVRSEE AWRQQEMDRM KQNEEARREE MSRSSTLISF IKSVIGEEIK IPNAFVHAQP LQTIPRQCEW DQTQGDVKFV FPGGRRWPQE EVQALIASRS
301: EVEEKTGVVH KGAIWDEIST RMKGRGYERS AKKCKEKWEN MNKYYKRVME SSKKQPEHTK TRSYFEKLES FYKTNSVSAE HSGEKEQ

Best Arabidopsis Sequence Match ( AT5G47660.1 )
(BLAST)

001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.