Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47660.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022149.1-P | Field mustard | nucleus | 99.48 | 99.48 |
| CDY40550 | Canola | nucleus | 96.12 | 95.14 |
| CDY17716 | Canola | nucleus | 60.98 | 68.01 |
| AT5G47660.1 | Thale cress | nucleus | 69.77 | 67.84 |
| CDX77787 | Canola | nucleus | 73.9 | 44.55 |
| VIT_00s0956g00030.t01 | Wine grape | nucleus | 20.67 | 37.91 |
| VIT_00s0259g00210.t01 | Wine grape | nucleus | 20.67 | 37.91 |
| KRH11595 | Soybean | nucleus | 27.65 | 31.66 |
| KRH36613 | Soybean | nucleus | 27.65 | 31.66 |
| Solyc11g012720.1.1 | Tomato | nucleus | 27.91 | 26.73 |
| PGSC0003DMT400034607 | Potato | nucleus | 26.36 | 26.22 |
| CDY44964 | Canola | nucleus | 21.45 | 21.56 |
| CDY45957 | Canola | nucleus | 26.87 | 21.31 |
| CDY13568 | Canola | nucleus | 26.87 | 21.1 |
| CDY62151 | Canola | nucleus | 27.39 | 19.45 |
| CDX93785 | Canola | nucleus | 28.68 | 18.85 |
| CDY48546 | Canola | nucleus | 20.41 | 18.81 |
| CDY45955 | Canola | nucleus | 21.19 | 18.64 |
| CDY71745 | Canola | nucleus | 26.87 | 18.18 |
| CDX85980 | Canola | nucleus | 9.82 | 17.92 |
| CDY65284 | Canola | nucleus | 24.81 | 17.33 |
| CDX88320 | Canola | nucleus | 24.29 | 17.28 |
| CDX85981 | Canola | nucleus | 15.5 | 16.44 |
| CDX68080 | Canola | nucleus | 24.55 | 16.41 |
| CDY48545 | Canola | nucleus, plastid | 23.51 | 16.02 |
| CDY52502 | Canola | nucleus | 23.0 | 14.91 |
| CDY05590 | Canola | nucleus | 22.74 | 14.72 |
| CDX86194 | Canola | nucleus | 22.22 | 14.1 |
| CDY52482 | Canola | nucleus | 21.96 | 14.03 |
| CDX87564 | Canola | nucleus | 14.99 | 13.58 |
| CDX70293 | Canola | nucleus | 19.12 | 12.96 |
| CDY44379 | Canola | nucleus | 18.09 | 11.88 |
| CDX80883 | Canola | nucleus | 15.25 | 11.57 |
| CDY11266 | Canola | nucleus | 14.73 | 11.18 |
| CDY10364 | Canola | nucleus | 14.47 | 11.05 |
| CDY04893 | Canola | nucleus | 12.92 | 9.86 |
| CDY45956 | Canola | cytosol | 0.0 | 0.0 |
| CDX87563 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | GO:A0A078GUU5 | UniProt:A0A078GUU5 | EnsemblPlants:CDY28914 | ProteinID:CDY28914 |
| ProteinID:CDY28914.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00041610001 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | PFAM:PF13837 | PFscan:PS50090 |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF7 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE57F7 |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g25620DBnaA02g25620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUU5]
Coordinates
chrLK032228:-:53440..55298
Molecular Weight (calculated)
44277.3 Da
IEP (calculated)
7.242
GRAVY (calculated)
-0.936
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLAGNCRK RLADDDFAED VDPFGGSDWM YGGRSLRSQG NDDALATLAD LAPPPQKLKP IRCVVNKASL EDRHPLDILA GSLDRLPEMG FLEDFDAPLG
101: SKIADVEESG LLTRGVGKGL RFETEVQGQI HDTSRDGVSL SPSFDSDSEG DSSQGVGKAV TGKRKRQSRE KREHFMEKLV GKMMRRQEKL HNQLINVMEK
201: MERERVRSEE AWRQQEMDRM KQNEEARREE MSRSSTLISF IKSVIGEELK IPNAFVHAQP LQTIPRQCEW DQTQGDVKFV FPGGRRWPQE EVQALIASRS
301: EVEEKTGVVH KGAIWDEIST RMKGRGYERS AKKCKEKWEN MNKYYKRVME SSKKQPEHTK TRSYFEKLES FYKTNSVSAE HSGEKEQ
101: SKIADVEESG LLTRGVGKGL RFETEVQGQI HDTSRDGVSL SPSFDSDSEG DSSQGVGKAV TGKRKRQSRE KREHFMEKLV GKMMRRQEKL HNQLINVMEK
201: MERERVRSEE AWRQQEMDRM KQNEEARREE MSRSSTLISF IKSVIGEELK IPNAFVHAQP LQTIPRQCEW DQTQGDVKFV FPGGRRWPQE EVQALIASRS
301: EVEEKTGVVH KGAIWDEIST RMKGRGYERS AKKCKEKWEN MNKYYKRVME SSKKQPEHTK TRSYFEKLES FYKTNSVSAE HSGEKEQ
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.