Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45956 | Canola | cytosol | 69.57 | 67.61 |
| CDX88320 | Canola | nucleus | 86.96 | 11.03 |
| CDY48545 | Canola | nucleus, plastid | 76.81 | 9.33 |
| CDX68080 | Canola | nucleus | 76.81 | 9.15 |
| CDY65284 | Canola | nucleus | 69.57 | 8.66 |
| CDX85980 | Canola | nucleus | 13.04 | 4.25 |
| CDY13568 | Canola | nucleus | 18.84 | 2.64 |
| CDY44964 | Canola | nucleus | 13.04 | 2.34 |
| CDY45957 | Canola | nucleus | 14.49 | 2.05 |
| CDY48546 | Canola | nucleus | 11.59 | 1.9 |
| CDX93785 | Canola | nucleus | 14.49 | 1.7 |
| CDX87564 | Canola | nucleus | 10.14 | 1.64 |
| CDY71745 | Canola | nucleus | 13.04 | 1.57 |
| CDX77787 | Canola | nucleus | 13.04 | 1.4 |
| CDY62151 | Canola | nucleus | 8.7 | 1.1 |
| CDY52482 | Canola | nucleus | 8.7 | 0.99 |
| CDX86194 | Canola | nucleus | 8.7 | 0.98 |
| CDY10364 | Canola | nucleus | 5.8 | 0.79 |
| CDY04893 | Canola | nucleus | 5.8 | 0.79 |
| CDY11266 | Canola | nucleus | 5.8 | 0.78 |
| CDX80883 | Canola | nucleus | 5.8 | 0.78 |
| CDY44379 | Canola | nucleus | 5.8 | 0.68 |
| CDY52502 | Canola | nucleus | 5.8 | 0.67 |
| CDX70293 | Canola | nucleus | 4.35 | 0.53 |
| CDY05590 | Canola | nucleus | 4.35 | 0.5 |
| CDX85981 | Canola | nucleus | 1.45 | 0.27 |
| CDY45955 | Canola | nucleus | 0.0 | 0.0 |
| CDY40550 | Canola | nucleus | 0.0 | 0.0 |
| CDY28914 | Canola | nucleus | 0.0 | 0.0 |
| CDY17716 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX87563 | EnsemblPlantsGene:GSBRNA2T00146564001 | ProteinID:CDX87563 | ProteinID:CDX87563.1 | SEG:seg | UniParc:UPI0004EF1F1C |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA07g33100D
Coordinates
chrLK031850:-:1237656..1238118
Molecular Weight (calculated)
7963.3 Da
IEP (calculated)
3.235
GRAVY (calculated)
-1.806
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MVQPEQQWPP AATVSQADHH PAQPLDQNYD DEEGTDEEDY DDEEEDEENE EEEGEFELVP SNDNKTNNV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.