CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008286.1-P	Field mustard	nucleus	100.0	94.39
CDY13568	Canola	nucleus	93.65	92.7
CDY48546	Canola	nucleus	56.56	65.71
CDY45955	Canola	nucleus	40.16	44.55
CDY65284	Canola	nucleus	48.16	42.42
CDX88320	Canola	nucleus	46.72	41.91
CDY48545	Canola	nucleus, plastid	47.54	40.85
CDX68080	Canola	nucleus	47.95	40.41
KRH70307	Soybean	nucleus	48.57	39.57
KRG91651	Soybean	nucleus	50.2	38.89
KRH08698	Soybean	nucleus	48.36	38.31
CDX87564	Canola	nucleus	32.17	36.77
CDY62151	Canola	nucleus	39.14	35.05
CDX85981	Canola	nucleus	25.82	34.52
CDY71745	Canola	nucleus	39.34	33.57
CDX93785	Canola	nucleus	39.75	32.94
CDY44964	Canola	nucleus	23.36	29.61
CDX85980	Canola	nucleus	11.89	27.36
CDY28914	Canola	nucleus	21.31	26.87
Zm00001d032453_P001	Maize	nucleus	42.83	26.66
Zm00001d013849_P001	Maize	nucleus	42.42	26.64
TraesCS1D01G162400.1	Wheat	nucleus, plastid	44.47	26.56
TraesCS1B01G203300.2	Wheat	nucleus	44.06	26.41
TraesCS1A01G176700.2	Wheat	nucleus	44.06	26.32
CDY40550	Canola	nucleus	20.9	26.09
HORVU1Hr1G046940.4	Barley	nucleus	44.26	26.09
KXG40355	Sorghum	nucleus, plastid	41.39	25.86
EER91374	Sorghum	nucleus	42.42	25.65
TraesCS5A01G558200.1	Wheat	nucleus, plastid	39.55	24.59
GSMUA_Achr8P11770_001	Banana	nucleus	8.61	24.56
Zm00001d027335_P001	Maize	nucleus	40.57	24.47
TraesCSU01G029700.1	Wheat	nucleus	39.34	24.4
HORVU4Hr1G089120.1	Barley	nucleus, plastid	39.34	24.21
TraesCS4B01G396900.1	Wheat	nucleus	34.22	24.13
CDX70293	Canola	nucleus	26.23	22.42
CDY05590	Canola	nucleus	27.46	22.41
CDY44379	Canola	nucleus	26.84	22.24
CDY52502	Canola	nucleus	27.05	22.11
CDY17716	Canola	nucleus	15.57	21.9
CDY10364	Canola	nucleus	22.13	21.3
CDY52482	Canola	nucleus	26.23	21.12
CDY11266	Canola	nucleus	21.72	20.78
CDX80883	Canola	nucleus	21.52	20.59
CDX86194	Canola	nucleus	25.61	20.49
CDY04893	Canola	nucleus	21.11	20.32
CDX77787	Canola	nucleus	23.36	17.76
CDY45956	Canola	cytosol	2.25	15.49
CDX87563	Canola	nucleus	2.05	14.49

Protein Annotations

EnsemblPlants:CDY45957	EnsemblPlantsGene:GSBRNA2T00082958001	Gene3D:1.10.10.60	GO:A0A078I769	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF50	PFAM:PF13837	PFscan:PS50090
ProteinID:CDY45957	ProteinID:CDY45957.1	SEG:seg	SMART:SM00717	UniParc:UPI0004EE2D44	UniProt:A0A078I769
MapMan:15.5.20	:	:	:	:	:

Description

BnaA02g17830DBnaA02g17830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I769]

Coordinates

chrLK032643:-:113971..116280

Molecular Weight (calculated)

56435.7 Da

IEP (calculated)

7.165

GRAVY (calculated)

-1.182

Length

488 amino acids

Sequence
(BLAST)

001: MGGSGEDEKD MKMEEIGEVG GGGGNRWPRP ETLALLRIRS EMDKAFRDST LKAPLWEEVS RKMKELGYKR SAKKCKEKFE NVYKYHKRTK EGRTGKSEGK
101: TYRFFEELQA LEALNSYPPE PGSQPLKSST ATTTQPSPTT PFPIYSNNHA TTIDTGFSPT SNDLINNVSS LNLFSSSTSS STASDEEEDH HHQDNRSRKK
201: RKYWKGLFTK LTNELMEKQE KVQKRFLETF ENQERERISR EEAWRVQEVA RINREHETLV HERSNAVAKD AVIISFLHKI SGGQQQQQQK HEVPQRKQYH
301: SEHSITFESK EPRPVLFDSN HSLSPSSSRW PKTEVEALIR IRKNLEANYQ ENGTRGPLWE EISGGMRRLG YNRSAKRCKE KWENINKYFK KVKESNKKRP
401: LDSKTCPYFN QLEALYNERN KSGALSILPL MLTPQLLPQE TQTEVKTDQG DKAEEGESEE DDYENEYEEG DNETSEFEIL LNKSSPMD

Best Arabidopsis Sequence Match ( AT1G76890.2 )
(BLAST)

001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT

Arabidopsis Description

GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.