CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003702.1-P	Field mustard	nucleus	76.19	69.87
CDY13568	Canola	nucleus	66.9	57.0
CDY45957	Canola	nucleus	65.71	56.56
AT1G76890.2	Thale cress	nucleus	76.43	55.83
CDX88320	Canola	nucleus	43.81	33.82
CDY45955	Canola	nucleus	34.52	32.95
CDY65284	Canola	nucleus	42.86	32.49
CDY48545	Canola	nucleus, plastid	43.57	32.22
CDX68080	Canola	nucleus	43.81	31.78
KRG91651	Soybean	nucleus	46.67	31.11
KRH70307	Soybean	nucleus	44.29	31.05
KRH08698	Soybean	nucleus	44.29	30.19
CDY62151	Canola	nucleus	34.29	26.42
CDX85980	Canola	nucleus	13.1	25.94
CDY71745	Canola	nucleus	34.52	25.35
CDX93785	Canola	nucleus	35.48	25.3
CDX87564	Canola	nucleus	25.24	24.82
CDY44964	Canola	nucleus	21.9	23.9
CDX85981	Canola	nucleus	19.52	22.47
TraesCS1D01G162400.1	Wheat	nucleus, plastid	40.24	20.69
TraesCS1B01G203300.2	Wheat	nucleus	40.0	20.64
Zm00001d032453_P001	Maize	nucleus	38.33	20.54
TraesCS1A01G176700.2	Wheat	nucleus	39.76	20.44
CDY28914	Canola	nucleus	18.81	20.41
KXG40355	Sorghum	nucleus, plastid	37.86	20.36
Zm00001d013849_P001	Maize	nucleus	37.62	20.33
HORVU1Hr1G046940.4	Barley	nucleus	40.0	20.29
CDY40550	Canola	nucleus	18.81	20.2
TraesCS4B01G396900.1	Wheat	nucleus	33.1	20.09
EER91374	Sorghum	nucleus	37.62	19.58
Zm00001d027335_P001	Maize	nucleus	36.19	18.79
CDY05590	Canola	nucleus	25.71	18.06
TraesCSU01G029700.1	Wheat	nucleus	33.57	17.92
HORVU4Hr1G089120.1	Barley	nucleus, plastid	33.81	17.91
TraesCS5A01G558200.1	Wheat	nucleus, plastid	33.33	17.83
CDY52502	Canola	nucleus	25.24	17.76
CDY52482	Canola	nucleus	23.81	16.5
CDX86194	Canola	nucleus	23.81	16.39
CDY17716	Canola	nucleus	13.33	16.14
CDX70293	Canola	nucleus	21.43	15.76
CDY44379	Canola	nucleus	20.95	14.94
CDY11266	Canola	nucleus	16.9	13.92
CDY10364	Canola	nucleus	16.67	13.81
CDX80883	Canola	nucleus	16.67	13.73
CDX77787	Canola	nucleus	20.71	13.55
CDY04893	Canola	nucleus	15.71	13.02
CDX87563	Canola	nucleus	1.9	11.59
GSMUA_Achr8P11770_001	Banana	nucleus	4.05	9.94
CDY45956	Canola	cytosol	1.67	9.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:A0A078IEY2	UniProt:A0A078IEY2	EnsemblPlants:CDY48546	ProteinID:CDY48546
ProteinID:CDY48546.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00091267001
InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR21654
PANTHER:PTHR21654:SF50	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE22D0	SEG:seg

Description

BnaC06g18740DBnaC06g18740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEY2]

Coordinates

chrLK032778:-:28198..30656

Molecular Weight (calculated)

49311.8 Da

IEP (calculated)

10.471

GRAVY (calculated)

-1.061

Length

420 amino acids

Sequence
(BLAST)

001: MDKTFRDSTL KSSLWEEISR KMMELGYKRS SKKCKEKFEN VYKYHKRTKY GRTRKSKGKT YRFFDELEAF ETINSYPPGS KFQPAKSPAA TTTTRQMFHL
101: DGIFLGITHL DVPKTVSNQQ VSVKPITTNP TFLAKQPSLR ITFPFYNNNH TTKVDTGFKP PSRDLLNNVS SLNLFSSSTS SSDEEEDQEK RSRKKRKYWK
201: GLFTKLTKEL MEKQEKMHKR FLKALESRER ENLKRRSLEG PRGGQEQQPH QQNYKIGTYN GNHSVSPCSS RWPKTEVEAL IRIRKNLEAN YLENGTKGPL
301: WEEISAEMRR FGYNRSPKRC KEKWENINKY FKKVKESNKK RPLDSKTCPY FHQLEALYNE RNKTGPLPIL PLLVTQPRQF LLSQETKAQF ETNQMDKISE
401: FEIVLNKTSS PMDINNNLFT

Best Arabidopsis Sequence Match ( AT1G76890.2 )
(BLAST)

001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT

Arabidopsis Description

GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.