CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74283	nucleus
CDX91963	nucleus
CDY34697	nucleus
CDY37545	nucleus
CDY43267	nucleus
CDY55800	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	CDX74283	AT3G01090.2	25697797
AT5G03680.1	CDX91963	AT3G01090.2	25697797
AT5G03680.1	CDY34697	AT3G01090.2	25697797
AT5G03680.1	CDY37545	AT3G01090.2	25697797
AT5G03680.1	CDY43267	AT3G01090.2	25697797
AT5G03680.1	CDY55800	AT3G01090.2	25697797
AT5G03680.1	CDX74283	AT3G01090.2	25697797
AT5G03680.1	CDX91963	AT3G01090.2	25697797
AT5G03680.1	CDY34697	AT3G01090.2	25697797
AT5G03680.1	CDY37545	AT3G01090.2	25697797
AT5G03680.1	CDY43267	AT3G01090.2	25697797
AT5G03680.1	CDY55800	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009518.1-P	Field mustard	nucleus	99.82	99.82
CDY10364	Canola	nucleus	86.34	97.24
AT5G03680.1	Thale cress	nucleus	85.99	83.08
CDY11266	Canola	nucleus	73.56	82.35
CDY04893	Canola	nucleus	73.03	82.25
CDY44379	Canola	nucleus	84.41	81.83
CDX80883	Canola	nucleus	72.85	81.57
VIT_08s0007g03820.t01	Wine grape	nucleus	45.88	46.87
KRG96146	Soybean	nucleus	45.88	45.33
KRH67857	Soybean	nucleus	45.36	44.5
PGSC0003DMT400072404	Potato	nucleus	32.05	44.1
Solyc09g009250.2.1	Tomato	nucleus	41.68	43.83
PGSC0003DMT400007016	Potato	nucleus	41.51	43.73
KRH32666	Soybean	nucleus	43.61	41.92
GSMUA_Achr8P07630_001	Banana	nucleus	29.07	41.71
CDY45955	Canola	nucleus	22.24	28.86
CDX85981	Canola	nucleus	17.34	27.12
CDY45957	Canola	nucleus	22.42	26.23
CDY13568	Canola	nucleus	22.59	26.17
CDX87564	Canola	nucleus	19.09	25.53
CDY65284	Canola	nucleus	24.69	25.45
CDX88320	Canola	nucleus	23.64	24.82
CDY62151	Canola	nucleus	22.94	24.04
CDY48545	Canola	nucleus, plastid	23.64	23.77
CDX68080	Canola	nucleus	23.99	23.66
CDX93785	Canola	nucleus	23.82	23.09
CDY71745	Canola	nucleus	22.77	22.73
CDY48546	Canola	nucleus	15.76	21.43
Zm00001d032453_P001	Maize	nucleus	27.85	20.28
HORVU1Hr1G046940.4	Barley	nucleus	28.72	19.81
Zm00001d013849_P001	Maize	nucleus	26.8	19.69
TraesCS1D01G162400.1	Wheat	nucleus, plastid	28.02	19.58
TraesCS1A01G176700.2	Wheat	nucleus	28.02	19.58
TraesCS1B01G203300.2	Wheat	nucleus	27.85	19.53
CDY40550	Canola	nucleus	13.31	19.44
EER91374	Sorghum	nucleus	27.15	19.21
CDY28914	Canola	nucleus	12.96	19.12
KXG40355	Sorghum	nucleus, plastid	25.39	18.57
CDY05590	Canola	nucleus	19.44	18.56
Zm00001d027335_P001	Maize	nucleus	25.92	18.29
TraesCS5A01G558200.1	Wheat	nucleus, plastid	25.04	18.22
HORVU4Hr1G089120.1	Barley	nucleus, plastid	25.22	18.16
CDY52502	Canola	nucleus	18.74	17.92
TraesCSU01G029700.1	Wheat	nucleus	24.69	17.92
TraesCS4B01G396900.1	Wheat	nucleus	21.37	17.63
CDY52482	Canola	nucleus	18.56	17.49
CDY44964	Canola	nucleus	11.73	17.4
CDY17716	Canola	nucleus	10.51	17.29
CDX86194	Canola	nucleus	17.86	16.72
CDX85980	Canola	nucleus	5.6	15.09
CDX77787	Canola	nucleus	15.24	13.55
CDX87563	Canola	nucleus	0.53	4.35
CDY45956	Canola	cytosol	0.53	4.23

Protein Annotations

EnsemblPlants:CDX70293	EnsemblPlantsGene:GSBRNA2T00136444001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	InterPro:SANT/Myb
ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF5	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX70293
ProteinID:CDX70293.1	SEG:seg	SMART:SM00717	UniParc:UPI0004EDDC81	MapMan:15.5.20	:

Description

BnaA10g26420D

Coordinates

chrLK031790:-:3970920..3973755

Molecular Weight (calculated)

64716.1 Da

IEP (calculated)

7.343

GRAVY (calculated)

-1.013

Length

571 amino acids

Sequence
(BLAST)

001: MEDHPSQYGI PELRQLMKGG GRTTSPSTSS HFPSDFFGFN LTAPPQQHRV QQFTTDHQEM GFLPHGIHGL GGSSSTTAGN NSNLNASTCG GGVGFGGFLD
101: GGGFSGGDGG ATGRWPRQET LTLLEIRSRL DHKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL
201: YGDSNNLVSI PNHNTQFVSN ALHGFHAQNV TTTTSNIHSV DGLHGFHHQQ SLSLSNNYNS SEMELMTSSS EGNDSSSRRK KRSSWKAKIK EFIDVSMKRL
301: IERQDAWLEK LTKVIEDKEE QRMMKEEEWR KREAARVDKE HLFWAKERER MEGRDVAVIE ALQYLTGKQL IKPLCSSPEE RNNENGSDQT MTTNNVSVKG
401: SGRCWDEQEI IKLREIRSSM DSAFQEVLEG SSDEFLWEEV AAKLTQLGFD QRSALICKEK WERISNGKMK EKKQINKKRK ENSSSCGVYY PRTEENQIYN
501: NQESGYNDND QHHQKMNEHG NNVGSSTSNA NAGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.