Factsheet for Bra009518.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021482.1-P	nucleus
Bra039146.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	Bra021482.1-P	AT3G01090.2	25697797
AT5G03680.1	Bra039146.1-P	AT3G01090.2	25697797
AT5G03680.1	Bra021482.1-P	AT3G01090.2	25697797
AT5G03680.1	Bra039146.1-P	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70293	Canola	nucleus	99.82	99.82
AT5G03680.1	Thale cress	nucleus	85.81	82.91
Bra005777.1-P	Field mustard	nucleus	81.96	81.68
Bra028824.1-P	Field mustard	nucleus	83.89	81.19
VIT_08s0007g03820.t01	Wine grape	nucleus	45.71	46.69
KRG96146	Soybean	nucleus	45.71	45.16
KRH67857	Soybean	nucleus	45.18	44.33
PGSC0003DMT400072404	Potato	nucleus	31.87	43.86
Solyc09g009250.2.1	Tomato	nucleus	41.51	43.65
PGSC0003DMT400007016	Potato	nucleus	41.33	43.54
GSMUA_Achr8P07630_001	Banana	nucleus	29.25	41.96
KRH32666	Soybean	nucleus	43.43	41.75
Bra003702.1-P	Field mustard	nucleus	20.67	25.76
Bra008285.1-P	Field mustard	nucleus	24.17	24.86
Bra008286.1-P	Field mustard	nucleus	22.24	24.56
Bra015716.1-P	Field mustard	nucleus	23.64	24.5
Bra015715.1-P	Field mustard	nucleus	23.29	23.17
Bra003703.1-P	Field mustard	nucleus	23.99	22.35
Bra040010.1-P	Field mustard	nucleus	23.82	21.86
Bra036731.1-P	Field mustard	nucleus	23.64	21.43
Zm00001d032453_P001	Maize	nucleus	27.67	20.15
HORVU1Hr1G046940.4	Barley	nucleus	28.55	19.69
Zm00001d013849_P001	Maize	nucleus	26.62	19.56
TraesCS1A01G176700.2	Wheat	nucleus	27.85	19.46
TraesCS1D01G162400.1	Wheat	nucleus, plastid	27.85	19.46
TraesCS1B01G203300.2	Wheat	nucleus	27.67	19.41
EER91374	Sorghum	nucleus	26.97	19.08
Bra022149.1-P	Field mustard	nucleus	12.78	18.86
KXG40355	Sorghum	nucleus, plastid	25.22	18.44
Zm00001d027335_P001	Maize	nucleus	25.74	18.17
TraesCS5A01G558200.1	Wheat	nucleus, plastid	24.87	18.09
Bra024925.1-P	Field mustard	nucleus	10.33	18.04
HORVU4Hr1G089120.1	Barley	nucleus, plastid	25.04	18.03
TraesCSU01G029700.1	Wheat	nucleus	24.52	17.79
Bra020607.1-P	Field mustard	nucleus	18.74	17.6
TraesCS4B01G396900.1	Wheat	nucleus	21.19	17.49
Bra009994.1-P	Field mustard	nucleus	17.69	16.56

Protein Annotations

EnsemblPlants:Bra009518.1	EnsemblPlants:Bra009518.1-P	EnsemblPlantsGene:Bra009518	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF5	PFAM:PF13837	PFscan:PS50090	SEG:seg
UniParc:UPI0002547B4D	UniProt:M4CZ71	MapMan:15.5.20	:	:	:

Description

AT5G03680 (E=4e-184) PTL | PTL (PETAL LOSS); transcription factor

Coordinates

chrA10:-:17039550..17042387

Molecular Weight (calculated)

64682.0 Da

IEP (calculated)

7.343

GRAVY (calculated)

-1.012

Length

571 amino acids

Sequence
(BLAST)

001: MEDHPSQYGI PELRQLMKGG GRTTSPSTSS HFPSDFFGFN LTAPPQQHRV QQFTTDHQEM GFLPHGIHGL GGSSSTTAGN NSNLNASTCG GGVGFGGFLD
101: GGGFSGGDGG ATGRWPRQET LTLLEIRSRL DHKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKLEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL
201: YGDSNNLVSI PNHNTQFVSN ALHGFHAQNV TTTTSNIHSV DGLHGFHHQQ SLSLSNNYNS SEMELMTSSS EGNDSSSRRK KRSSWKAKIK EFIDVSMKRL
301: IERQDAWLEK LTKVIEDKEE QRMMKEEEWR KREAARVDKE HLFWAKERER MEGRDVAVIE ALQYLTGKQL IKPLCSSPEE RNNENGSDQT MTTNNVSVKG
401: SGRCWDEQEI IKLREIRSSM DSAFQEVLEG SSDEFLWEEV AAKLTQLGFD QRSALICKEK WERISNGKMK EKKQINKKRK ENSSSCGVYY PRTEENQIYN
501: NQESGYNDND QHHQKMNEHG NNVGSSTSNA NAGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.