Factsheet for Bra024925.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra040510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47660.1	Bra040510.1-P	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17716	Canola	nucleus	99.69	93.95
Bra022149.1-P	Field mustard	nucleus	72.17	60.98
AT5G47660.1	Thale cress	nucleus	66.67	54.77
VIT_00s0259g00210.t01	Wine grape	nucleus	16.82	26.07
VIT_00s0956g00030.t01	Wine grape	nucleus	16.21	25.12
KRH36613	Soybean	nucleus	22.94	22.19
KRH11595	Soybean	nucleus	22.32	21.6
Solyc11g012720.1.1	Tomato	nucleus	24.46	19.8
PGSC0003DMT400034607	Potato	nucleus	22.63	19.02
Bra003702.1-P	Field mustard	nucleus	22.63	16.16
Bra008286.1-P	Field mustard	nucleus	23.24	14.7
Bra040010.1-P	Field mustard	nucleus	26.91	14.15
Bra036731.1-P	Field mustard	nucleus	26.61	13.81
Bra015716.1-P	Field mustard	nucleus	23.24	13.79
Bra008285.1-P	Field mustard	nucleus	23.24	13.69
Bra015715.1-P	Field mustard	nucleus	23.85	13.59
Bra003703.1-P	Field mustard	nucleus	23.55	12.56
Bra020607.1-P	Field mustard	nucleus	22.02	11.84
Bra009994.1-P	Field mustard	nucleus	21.71	11.64
Bra009518.1-P	Field mustard	nucleus	18.04	10.33
Bra005777.1-P	Field mustard	nucleus	17.13	9.77
Bra028824.1-P	Field mustard	nucleus	16.82	9.32

Protein Annotations

EnsemblPlants:Bra024925.1	EnsemblPlants:Bra024925.1-P	EnsemblPlantsGene:Bra024925	Gene3D:1.10.10.60	ncoils:Coil	PANTHER:PTHR21654
PANTHER:PTHR21654:SF7	SEG:seg	UniParc:UPI000253FA7F	UniProt:M4E819	MapMan:15.5.20	:

Description

AT5G47660 (E=1e-026) | DNA-binding protein-related

Coordinates

chrA06:-:24274391..24275894

Molecular Weight (calculated)

37754.8 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.968

Length

327 amino acids

Sequence
(BLAST)

001: MELLAGNCRK RPADDFAEDV DPFGSSEWMY RSRSLRTQGN DDALATLADL ASPPQKQKPI RCIVKPPSED RQHPLDILAG SLDRLPPEMG FLGDGGCFEA
101: PWDEVEMEVR GRVSRRDGVS LSSSADSDSD SFQGGLKGKR KRKTREKMDH FVEKLVGSMM KRQEKMHNQL INVMEKMEHE RTLSEEAWRQ QEIERMKQNE
201: EAQMREMSHS SSIIPFIKSV IGEEEDIEMP NLTIPLPKQS AHQRQRDVKF VFPSGRRWPH EEVQALIDSR SQVEEKTGFH RVAIWDDVSA KMKERGKKTQ
301: PEHRKTRSYF EKLGKLYKTN SVVEKEE

Best Arabidopsis Sequence Match ( AT5G47660.1 )
(BLAST)

001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.