Factsheet for Bra003703.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68080	Canola	nucleus	93.8	99.31
Bra008285.1-P	Field mustard	nucleus	76.51	84.5
Bra015716.1-P	Field mustard	nucleus	75.2	83.67
AT1G76880.1	Thale cress	nucleus	79.61	80.93
KRH70308	Soybean	nucleus	50.73	49.29
KRH08699	Soybean	nucleus	50.57	47.33
KRG91649	Soybean	nucleus	49.1	46.74
Bra008286.1-P	Field mustard	nucleus	39.31	46.62
Bra003702.1-P	Field mustard	nucleus	34.58	46.29
KRH35149	Soybean	nucleus	49.43	45.43
Bra015715.1-P	Field mustard	nucleus	41.27	44.08
Bra040010.1-P	Field mustard	nucleus	36.54	36.01
Bra036731.1-P	Field mustard	nucleus	36.38	35.4
Zm00001d013849_P001	Maize	nucleus	38.83	30.63
Zm00001d032453_P001	Maize	nucleus	39.15	30.61
EER91374	Sorghum	nucleus	39.31	29.86
TraesCS1B01G203300.2	Wheat	nucleus	38.99	29.36
TraesCSU01G029700.1	Wheat	nucleus	37.68	29.35
TraesCS4B01G396900.1	Wheat	nucleus	33.12	29.34
TraesCS1D01G162400.1	Wheat	nucleus, plastid	38.99	29.25
TraesCS1A01G176700.2	Wheat	nucleus	38.99	29.25
HORVU1Hr1G046940.4	Barley	nucleus	39.48	29.23
HORVU4Hr1G089120.1	Barley	nucleus, plastid	37.52	29.0
TraesCS5A01G558200.1	Wheat	nucleus, plastid	37.03	28.92
KXG40355	Sorghum	nucleus, plastid	36.7	28.81
GSMUA_Achr8P11770_001	Banana	nucleus	7.99	28.66
Zm00001d027335_P001	Maize	nucleus	35.56	26.95
Bra022149.1-P	Field mustard	nucleus	15.5	24.55
Bra005777.1-P	Field mustard	nucleus	22.68	24.26
Bra009518.1-P	Field mustard	nucleus	22.35	23.99
Bra028824.1-P	Field mustard	nucleus	22.84	23.73
Bra024925.1-P	Field mustard	nucleus	12.56	23.55
Bra020607.1-P	Field mustard	nucleus	22.02	22.2
Bra009994.1-P	Field mustard	nucleus	21.37	21.48

Protein Annotations

EnsemblPlants:Bra003703.1	EnsemblPlants:Bra003703.1-P	EnsemblPlantsGene:Bra003703	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837	PFscan:PS50090	SEG:seg
SMART:SM00717	UniParc:UPI000254154B	UniProt:M4CHM0	MapMan:15.5.20	:	:

Description

AT1G76880 (E=5e-173) | trihelix DNA-binding protein, putative

Coordinates

chrA07:-:14595620..14597951

Molecular Weight (calculated)

69077.2 Da

IEP (calculated)

6.628

GRAVY (calculated)

-1.103

Length

613 amino acids

Sequence
(BLAST)

001: MMQLGGTTTT AVTSATPPPS NDSAATEAAA AAATVGAFEV SEEMNDRGFG GNRWPRQETL ALLKIRSDMG IAFRDSSVKG PLWEEVSRKM AELGYIRNAK
101: KCKEKFENVY KYHKRTKEGR TGKSEGKTYR FFDQLEALET RPTSSSLHHQ QQQQPPPQTQ PQPLQPQPPL RPHNNNSSMF PTPPPVTTIT PQITNTTLPP
201: YTQPVNVPSF PNISGDFLSD DSTSSSHSTS SDVEVGDGTT MTRKKKRKRK WKEFFERLTR QVVDKQEELQ RKFLEAVEKR EHERLVREES WRVQEIARIN
301: RERDILAQER SMSAAKDAAV MAFLQKLSEK PNPQGQSIPQ QQPQPQQPPS QMQVNNNNNQ QTPQPPPPPI SQPTQPVTPT VDTSKTDNGD QNMTPVSASA
401: AGALSSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMKRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHTSNNVIAS SSSTSGLVKP DNSVPLMVQP EQQWPPAMAT TTMTSTVAAT AQPDQHPPPQ PLDKNFDDEE GTDGEEYDEE EDYEENEEEE GGEFELVPSN
601: NNNNNNNKPT NNM

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.