CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91649	Soybean	nucleus	88.46	91.61
KRH08699	Soybean	nucleus	62.22	63.36
KRH70308	Soybean	nucleus	59.22	62.6
CDY45955	Canola	nucleus	35.98	54.55
CDX88320	Canola	nucleus	44.23	54.23
Bra015716.1-P	Field mustard	nucleus	44.68	54.08
KRH35148	Soybean	cytosol, mitochondrion, nucleus	15.89	53.81
Bra008285.1-P	Field mustard	nucleus	43.63	52.43
CDX68080	Canola	nucleus	45.13	51.99
CDY65284	Canola	nucleus	42.43	51.08
CDY48545	Canola	nucleus, plastid	43.18	50.7
AT1G76880.1	Thale cress	nucleus	45.43	50.25
Bra003703.1-P	Field mustard	nucleus	45.43	49.43
KRH70307	Soybean	nucleus	42.13	46.91
KRG91651	Soybean	nucleus	43.33	45.87
CDX87564	Canola	nucleus	29.24	45.67
KRH08698	Soybean	nucleus	42.13	45.62
KRH38181	Soybean	nucleus	32.98	44.9
KRH53849	Soybean	nucleus	33.28	44.67
KRH64101	Soybean	nucleus	33.28	44.4
KRH35147	Soybean	nucleus	18.89	44.21
Zm00001d032453_P001	Maize	nucleus	41.38	35.2
Zm00001d013849_P001	Maize	nucleus	40.33	34.62
EER91374	Sorghum	nucleus	40.93	33.83
KRH36613	Soybean	nucleus	17.09	33.73
TraesCS1D01G162400.1	Wheat	nucleus, plastid	40.93	33.41
TraesCS1A01G176700.2	Wheat	nucleus	40.93	33.41
TraesCS1B01G203300.2	Wheat	nucleus	40.63	33.29
KRH11595	Soybean	nucleus	16.79	33.14
HORVU1Hr1G046940.4	Barley	nucleus	41.08	33.09
KXG40355	Sorghum	nucleus, plastid	38.08	32.52
CDY45956	Canola	cytosol	3.45	32.39
GSMUA_Achr8P11770_001	Banana	nucleus	8.25	32.16
TraesCS5A01G558200.1	Wheat	nucleus, plastid	37.48	31.85
TraesCSU01G029700.1	Wheat	nucleus	37.48	31.77
TraesCS4B01G396900.1	Wheat	nucleus	32.53	31.36
HORVU4Hr1G089120.1	Barley	nucleus, plastid	36.88	31.02
Zm00001d027335_P001	Maize	nucleus	37.18	30.66
KRG96146	Soybean	nucleus	23.54	27.16
KRH67857	Soybean	nucleus	23.39	26.8
KRH32666	Soybean	nucleus	22.79	25.59
KRH34074	Soybean	nucleus	22.04	25.3
KRG92051	Soybean	nucleus	19.04	23.65
KRG96954	Soybean	nucleus	21.14	23.5
KRH34733	Soybean	nucleus	19.04	23.43
KRH68714	Soybean	nucleus	21.44	22.95
KRG92655	Soybean	nucleus	22.79	22.65

Protein Annotations

EMBL:ACUP02006652	EnsemblPlants:KRH35149	EnsemblPlantsGene:GLYMA_10G225200	EntrezGene:100811604	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837
PFscan:PS50090	ProteinID:KRH35149	ProteinID:KRH35149.1	SEG:seg	SMART:SM00717	UniParc:UPI000233C4E2
UniProt:I1LDG6	MapMan:15.5.20	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:45579021..45582548

Molecular Weight (calculated)

73471.7 Da

IEP (calculated)

5.192

GRAVY (calculated)

-0.873

Length

667 amino acids

Sequence
(BLAST)

001: MLGDSAVLGA GGGGGGGRGG GVESGASADA VAATVTVTHD VATTTGGGGG GSNNSGDDER GRIEEGERSF GGNRWPRQET LALLRIRSDM DVAFRDASVK
101: GPLWEEVSRK MAELGYHRSS KKCKEKFENV YKYHKRTKEG RSGKQDGKTY RFFDQLQALE NHSPTPHSPN PSPKPPQSAP SRVVASSVSL PIATTTTVSL
201: PIPTPTTVPM QPILSNNAIL TSSVPNITVP STTPLPITIP QPILTSPSIN LTIPSYPPTN PTNFPPPPNP TLPSSFPTDT FSNSSSSSTS SEETLEGRRK
301: RKRKWKDFFE RLMKEVIEKQ EELQKKFLEA IEKREDDRIA REEAWRVQEM KRINREREIL AQERSIAAAK DAAVMSFLQK IAEQQNLGQV STNINLVQQP
401: QPQLQPQPPL QQQVTQPSIA AAQPPVQQPP PVVVTQPVVL PVVSQVTNME IVKADNNSNN NNNGENFLAP SSSRWPKVEV QALIKLRTSM DEKYQENGPK
501: GPLWEEISAS MKKLGYNRNA KRCKEKWENI NKYFKKVKES NKRRPEDSKT CPYFHQLDAL YRQKHRGEES PAAVEAKPES AVAPLMVQPE QQWPPQQQQQ
601: DRDITMEDME NEDDEYEEER EGEEELEDDE DEEDEEGGGG GGNYEIVANK TSGGGGASAA SVGASTE

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.