CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01228	nucleus
KRH18445	nucleus
KRH44934	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	KRH01228	AT3G01090.2	25697797
AT5G03680.1	KRH18445	AT3G01090.2	25697797
AT5G03680.1	KRH44934	AT3G01090.2	25697797
AT5G03680.1	KRH01228	AT3G01090.2	25697797
AT5G03680.1	KRH18445	AT3G01090.2	25697797
AT5G03680.1	KRH44934	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96146	Soybean	nucleus	93.47	94.12
KRH32666	Soybean	nucleus	69.76	68.35
VIT_08s0007g03820.t01	Wine grape	nucleus	61.51	64.04
PGSC0003DMT400007016	Potato	nucleus	48.8	52.4
PGSC0003DMT400072404	Potato	nucleus	36.43	51.08
Solyc09g009250.2.1	Tomato	nucleus	46.91	50.28
CDY10364	Canola	nucleus	40.72	46.75
CDY11266	Canola	nucleus	40.72	46.47
CDY04893	Canola	nucleus	40.21	46.15
CDX80883	Canola	nucleus	40.38	46.08
CDX70293	Canola	nucleus	44.5	45.36
Bra009518.1-P	Field mustard	nucleus	44.33	45.18
Bra005777.1-P	Field mustard	nucleus	44.33	45.03
CDY44379	Canola	nucleus	45.36	44.82
Bra028824.1-P	Field mustard	nucleus	45.36	44.75
AT5G03680.1	Thale cress	nucleus	45.02	44.33
AT3G10000.1	Thale cress	nucleus	36.6	44.28
GSMUA_Achr8P07630_001	Banana	nucleus	29.55	43.22
KRG92051	Soybean	nucleus	35.4	38.36
KRH34733	Soybean	nucleus	34.71	37.27
KRH53849	Soybean	nucleus	23.02	26.96
KRH38181	Soybean	nucleus	22.51	26.73
KRH64101	Soybean	nucleus	22.68	26.4
KRH35147	Soybean	nucleus	12.2	24.91
KRG91649	Soybean	nucleus	27.15	24.53
KRH70308	Soybean	nucleus	25.95	23.93
KRH70307	Soybean	nucleus	24.4	23.71
KRH35149	Soybean	nucleus	26.8	23.39
KRH08698	Soybean	nucleus	24.57	23.21
KRH08699	Soybean	nucleus	26.12	23.21
KRH11595	Soybean	nucleus	13.4	23.08
KRH36613	Soybean	nucleus	13.4	23.08
KRG91651	Soybean	nucleus	23.88	22.06
Zm00001d032453_P001	Maize	nucleus	29.04	21.56
Zm00001d013849_P001	Maize	nucleus	28.69	21.49
KRH34074	Soybean	nucleus	21.31	21.34
KRH35148	Soybean	cytosol, mitochondrion, nucleus	7.22	21.32
KXG40355	Sorghum	nucleus, plastid	28.35	21.13
Zm00001d027335_P001	Maize	nucleus	29.04	20.89
TraesCS1A01G176700.2	Wheat	nucleus	28.87	20.56
EER91374	Sorghum	nucleus	28.35	20.45
TraesCS1D01G162400.1	Wheat	nucleus, plastid	28.52	20.32
HORVU1Hr1G046940.4	Barley	nucleus	28.87	20.29
HORVU4Hr1G089120.1	Barley	nucleus, plastid	27.49	20.18
TraesCS5A01G558200.1	Wheat	nucleus, plastid	27.15	20.13
TraesCSU01G029700.1	Wheat	nucleus	27.15	20.08
TraesCS1B01G203300.2	Wheat	nucleus	28.01	20.02
TraesCS4B01G396900.1	Wheat	nucleus	23.37	19.65
KRG96954	Soybean	nucleus	19.42	18.83
KRH68714	Soybean	nucleus	19.76	18.46
KRG92655	Soybean	nucleus	21.13	18.33

Protein Annotations

EMBL:ACUP02002084	EnsemblPlants:KRH67857	EnsemblPlantsGene:GLYMA_03G191700	EntrezGene:100815903	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF5	PFAM:PF13837
PFscan:PS50090	ProteinID:KRH67857	ProteinID:KRH67857.1	SEG:seg	SMART:SM00717	UniParc:UPI000296D38D
UniProt:I1JPY0	MapMan:15.5.20	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:40237035..40240538

Molecular Weight (calculated)

66763.4 Da

IEP (calculated)

6.644

GRAVY (calculated)

-1.059

Length

582 amino acids

Sequence
(BLAST)

001: MEMEDHHRHH HQYGITDLRQ LVNGPRPTHF PTMPPPPKAE LFPGDSNLQA ATQQHYEMMM FGRQVADIMP PRCLHDFAST DSATNIAVAT PTTTPSASTP
101: PLSCLEAETA GCIGGDASTG RWPRQETLTL LEIRSRLDSK FKEANQKGPL WDEVSRNMSE EHGYQRSGKK CREKFENLYK YYKKTKEGKA GRQDGKHYRF
201: FRQLEALYGE NSNQASVPET NFGSGSLRFH TSSHNNNPSQ TNQEMFQSQK HCDSLSLTNS TDLDTSSSDD NDQNSTGREL NKDNDSMEKR RKRVSGRSWK
301: VKIKDFIDSQ MRKLVEKQEE WLDKLTKTLE QKEKERVLRE EEWRRQESVR LEREHKFWAK ERAWIEARDA ALMEALHKLT RNEIMKSTHS HEGLMVTGIQ
401: IHSENQNEDG SEILNSTAAR GAESWPESEI ARLQQLRAEM ETRYMQSGFS EEVMWEEIAT KMACFGYERS ALVFKEKWES ISSNYARSAK DGSKKRKEDS
501: RSCFYFDNSD QSSLYNQGGA YCDINDQRHE TGRLQTNDGS SPSNSNVGNA VAGDNCFPFL MTEGGNLWEN YSLKVNKACQ NQ

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.