Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063153 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03680.1 | PGSC0003DMT400063153 | AT3G01090.2 | 25697797 |
| AT5G03680.1 | PGSC0003DMT400063153 | AT3G01090.2 | 25697797 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007016 | Potato | nucleus | 50.12 | 38.38 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 50.12 | 37.21 |
| KRG96146 | Soybean | nucleus | 51.33 | 36.85 |
| KRH67857 | Soybean | nucleus | 51.08 | 36.43 |
| CDY10364 | Canola | nucleus | 44.34 | 36.29 |
| CDY11266 | Canola | nucleus | 43.86 | 35.69 |
| GSMUA_Achr8P07630_001 | Banana | nucleus | 34.22 | 35.68 |
| CDX80883 | Canola | nucleus | 43.37 | 35.29 |
| CDY04893 | Canola | nucleus | 42.89 | 35.11 |
| KRH32666 | Soybean | nucleus | 49.88 | 34.85 |
| AT3G10000.1 | Thale cress | nucleus | 38.07 | 32.85 |
| CDX70293 | Canola | nucleus | 44.1 | 32.05 |
| Bra009518.1-P | Field mustard | nucleus | 43.86 | 31.87 |
| Bra005777.1-P | Field mustard | nucleus | 43.37 | 31.41 |
| CDY44379 | Canola | nucleus | 44.1 | 31.07 |
| AT5G03680.1 | Thale cress | nucleus | 43.61 | 30.63 |
| Bra028824.1-P | Field mustard | nucleus | 43.13 | 30.34 |
| PGSC0003DMT400010112 | Potato | nucleus | 22.89 | 18.89 |
| PGSC0003DMT400061942 | Potato | nucleus | 24.58 | 16.24 |
| PGSC0003DMT400080676 | Potato | nucleus | 18.07 | 16.09 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 27.47 | 13.95 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 27.71 | 13.89 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 26.27 | 13.89 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 26.51 | 13.87 |
| TraesCSU01G029700.1 | Wheat | nucleus | 26.27 | 13.85 |
| Zm00001d027335_P001 | Maize | nucleus | 26.99 | 13.84 |
| Zm00001d013849_P001 | Maize | nucleus | 25.78 | 13.77 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 26.99 | 13.76 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 26.99 | 13.71 |
| KXG40355 | Sorghum | nucleus, plastid | 25.78 | 13.7 |
| Zm00001d032453_P001 | Maize | nucleus | 25.78 | 13.65 |
| EER91374 | Sorghum | nucleus | 25.78 | 13.26 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 21.69 | 13.01 |
| PGSC0003DMT400034607 | Potato | nucleus | 11.33 | 12.08 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072404 | EnsemblPlantsGene:PGSC0003DMG400028172 | EntrezGene:102583015 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF5 | PFAM:PF13837 | PFscan:PS50090 | PGSC:PGSC0003DMG400028172 |
| RefSeq:XP_006339311.1 | SEG:seg | UniParc:UPI0002969212 | UniProt:M1CQ85 | MapMan:15.5.20 | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028172]
Coordinates
chr10:-:55616676..55619741
Molecular Weight (calculated)
48788.1 Da
IEP (calculated)
8.147
GRAVY (calculated)
-1.127
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHQYGMMD LTQYLNGRPL FPSVSPNLTP DLLCGNQHFD MLMATTTATT TTTHVPQHDN YLPHHHHYHY HHGFLPESST VAAATGASVS GGCTLSALEM
101: EGGNGRWPRQ ETLTLLEVRS QLDSKFKEAI QKGPLWDEVS RIMSEEYRYQ RSGKKCREKF ENLYKYYKKT KGGKAGRQDG KHYRYFRQLE ALYGKTSNTI
201: NTNTFHHQVH YNQEPHHCPK LSDNNLYDSS DSDDSDNSSN DENDDSKRKN IKKKGKRSWK GKIRDFMDIQ MRKLMEKQDI WLEKMMKTIE DKEQERVLRE
301: EEWRKKEEIR LEKQQKFWAD ERAWIEARDA VLIGTLRKLN GEKIMKSSTT NYNDENGSMF YYNKKQKEMN SLSSSCYNNF QIKNEEERRI SYCETSRHVP
401: NIHDTIDDGY VARIL
101: EGGNGRWPRQ ETLTLLEVRS QLDSKFKEAI QKGPLWDEVS RIMSEEYRYQ RSGKKCREKF ENLYKYYKKT KGGKAGRQDG KHYRYFRQLE ALYGKTSNTI
201: NTNTFHHQVH YNQEPHHCPK LSDNNLYDSS DSDDSDNSSN DENDDSKRKN IKKKGKRSWK GKIRDFMDIQ MRKLMEKQDI WLEKMMKTIE DKEQERVLRE
301: EEWRKKEEIR LEKQQKFWAD ERAWIEARDA VLIGTLRKLN GEKIMKSSTT NYNDENGSMF YYNKKQKEMN SLSSSCYNNF QIKNEEERRI SYCETSRHVP
401: NIHDTIDDGY VARIL
001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
Arabidopsis Description
PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.