Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04893 | Canola | nucleus | 83.36 | 96.84 |
| CDY11266 | Canola | nucleus | 74.36 | 85.88 |
| CDY10364 | Canola | nucleus | 73.34 | 85.21 |
| CDX80883 | Canola | nucleus | 73.51 | 84.9 |
| CDX70293 | Canola | nucleus | 81.83 | 84.41 |
| AT3G10000.1 | Thale cress | nucleus | 52.63 | 64.45 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 46.01 | 48.48 |
| KRG96146 | Soybean | nucleus | 45.33 | 46.19 |
| KRH67857 | Soybean | nucleus | 44.82 | 45.36 |
| Solyc09g009250.2.1 | Tomato | nucleus | 41.26 | 44.75 |
| PGSC0003DMT400072404 | Potato | nucleus | 31.07 | 44.1 |
| PGSC0003DMT400007016 | Potato | nucleus | 40.58 | 44.1 |
| GSMUA_Achr8P07630_001 | Banana | nucleus | 29.2 | 43.22 |
| KRH32666 | Soybean | nucleus | 42.44 | 42.09 |
| CDY45955 | Canola | nucleus | 21.73 | 29.09 |
| CDX85981 | Canola | nucleus | 17.32 | 27.95 |
| CDY45957 | Canola | nucleus | 22.24 | 26.84 |
| CDY13568 | Canola | nucleus | 22.41 | 26.77 |
| CDX88320 | Canola | nucleus | 23.77 | 25.74 |
| CDY65284 | Canola | nucleus | 24.11 | 25.63 |
| CDX87564 | Canola | nucleus | 18.51 | 25.53 |
| CDY48545 | Canola | nucleus, plastid | 23.09 | 23.94 |
| CDY62151 | Canola | nucleus | 22.07 | 23.85 |
| CDX68080 | Canola | nucleus | 23.43 | 23.83 |
| CDX93785 | Canola | nucleus | 22.92 | 22.92 |
| CDY71745 | Canola | nucleus | 22.24 | 22.9 |
| CDY48546 | Canola | nucleus | 14.94 | 20.95 |
| Zm00001d032453_P001 | Maize | nucleus | 26.83 | 20.15 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 27.67 | 19.69 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 27.16 | 19.58 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 27.16 | 19.58 |
| Zm00001d013849_P001 | Maize | nucleus | 25.81 | 19.56 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 26.99 | 19.53 |
| EER91374 | Sorghum | nucleus | 26.49 | 19.33 |
| KXG40355 | Sorghum | nucleus, plastid | 25.3 | 19.08 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 25.13 | 18.66 |
| Zm00001d027335_P001 | Maize | nucleus | 25.47 | 18.54 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 24.62 | 18.47 |
| TraesCSU01G029700.1 | Wheat | nucleus | 24.62 | 18.42 |
| CDY28914 | Canola | nucleus | 11.88 | 18.09 |
| CDY05590 | Canola | nucleus | 18.34 | 18.06 |
| CDY40550 | Canola | nucleus | 11.88 | 17.9 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 20.71 | 17.63 |
| CDY52482 | Canola | nucleus | 17.83 | 17.33 |
| CDY52502 | Canola | nucleus | 17.49 | 17.25 |
| CDY44964 | Canola | nucleus | 10.87 | 16.62 |
| CDX86194 | Canola | nucleus | 17.15 | 16.56 |
| CDY17716 | Canola | nucleus | 9.68 | 16.43 |
| CDX85980 | Canola | nucleus | 4.92 | 13.68 |
| CDX77787 | Canola | nucleus | 14.09 | 12.93 |
| CDX87563 | Canola | nucleus | 0.68 | 5.8 |
| CDY45956 | Canola | cytosol | 0.68 | 5.63 |
Protein Annotations
| EnsemblPlants:CDY44379 | EnsemblPlantsGene:GSBRNA2T00080047001 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF5 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDY44379 | ProteinID:CDY44379.1 |
| SEG:seg | UniParc:UPI0004EDD749 | UniProt:A0A078I4A7 | MapMan:15.5.20 | : | : |
Description
BnaC02g02980DBnaC02g02980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4A7]
Coordinates
chrLK032587:+:226017..228848
Molecular Weight (calculated)
66329.8 Da
IEP (calculated)
6.558
GRAVY (calculated)
-0.974
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHHPQYGV PELRQLMQGR TTTTESPSTS SHFPSDFFGF NLAPAAPPPP PQHHRLHQFT TDQEMGFLPR GIHGLGGSSS TAGNNSNLNA SSSGGAVGFS
101: GFLDGGGIGG GGGGDGGGTG RWPRQETLTL LEIRSRLDHK FKEANQKGPL WDEVSRIMSE EHGYQRSGKK CREKFENLYK YYKKTREGKA GRQDGKHYRF
201: FRQLEALYGD SNNLVPCPSH NTQFMSNALH GFHTQNAMND VTTTTSNIHN VDSVHGFHRQ SLSLSNNYNS SELELVTSSS EGNDSSSRRK KRSWKNKIKE
301: FIDVNMKRLM ERQDVWLEKL TKVIEDKEEQ RMMKEEEWRK SEAARIDKEH LFWSKERERM EARDVAVIEA LQFLTGKTLI KPLCSSPEER INGNNEIQKN
401: SENQNENESD QTMTNNVSIE GSGSCWNEQG ITKLMEIRTS MDSAFQEILG GCSDDFLWEE VAGKMAQLGF DQKSALLCKE KWEWISNGKK KMNKKRKDNS
501: SSCGVYYPIT EENTIYNNQE SGYNDNDQRH QMNEQGNVGS STSNVNAAAG NPSGAMAANT NCFPFFMGDG DQNLWESYGL RLNKGENHE
101: GFLDGGGIGG GGGGDGGGTG RWPRQETLTL LEIRSRLDHK FKEANQKGPL WDEVSRIMSE EHGYQRSGKK CREKFENLYK YYKKTREGKA GRQDGKHYRF
201: FRQLEALYGD SNNLVPCPSH NTQFMSNALH GFHTQNAMND VTTTTSNIHN VDSVHGFHRQ SLSLSNNYNS SELELVTSSS EGNDSSSRRK KRSWKNKIKE
301: FIDVNMKRLM ERQDVWLEKL TKVIEDKEEQ RMMKEEEWRK SEAARIDKEH LFWSKERERM EARDVAVIEA LQFLTGKTLI KPLCSSPEER INGNNEIQKN
401: SENQNENESD QTMTNNVSIE GSGSCWNEQG ITKLMEIRTS MDSAFQEILG GCSDDFLWEE VAGKMAQLGF DQKSALLCKE KWEWISNGKK KMNKKRKDNS
501: SSCGVYYPIT EENTIYNNQE SGYNDNDQRH QMNEQGNVGS STSNVNAAAG NPSGAMAANT NCFPFFMGDG DQNLWESYGL RLNKGENHE
001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
Arabidopsis Description
PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.