CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70308	Soybean	nucleus	86.11	89.38
KRG91649	Soybean	nucleus	62.9	63.98
KRH35149	Soybean	nucleus	63.36	62.22
KRH35148	Soybean	cytosol, mitochondrion, nucleus	17.1	56.85
CDX88320	Canola	nucleus	46.41	55.88
CDY45955	Canola	nucleus	37.4	55.68
Bra015716.1-P	Field mustard	nucleus	46.72	55.54
Bra008285.1-P	Field mustard	nucleus	45.5	53.69
CDY65284	Canola	nucleus	45.19	53.43
CDX68080	Canola	nucleus	46.56	52.68
AT1G76880.1	Thale cress	nucleus	48.4	52.57
CDY48545	Canola	nucleus, plastid	45.5	52.46
Bra003703.1-P	Field mustard	nucleus	47.33	50.57
KRH70307	Soybean	nucleus	44.27	48.41
KRH08698	Soybean	nucleus	44.43	47.24
CDX87564	Canola	nucleus	30.69	47.07
KRG91651	Soybean	nucleus	45.19	46.98
KRH35147	Soybean	nucleus	19.69	45.26
KRH53849	Soybean	nucleus	33.44	44.06
KRH38181	Soybean	nucleus	32.82	43.88
KRH64101	Soybean	nucleus	32.82	43.0
KRH36613	Soybean	nucleus	17.86	34.62
Zm00001d032453_P001	Maize	nucleus	40.61	33.93
KRH11595	Soybean	nucleus	17.25	33.43
Zm00001d013849_P001	Maize	nucleus	39.39	33.2
EER91374	Sorghum	nucleus	40.0	32.47
CDY45956	Canola	cytosol	3.51	32.39
TraesCS1D01G162400.1	Wheat	nucleus, plastid	40.0	32.07
TraesCS1B01G203300.2	Wheat	nucleus	39.85	32.06
HORVU1Hr1G046940.4	Barley	nucleus	40.46	32.0
TraesCS1A01G176700.2	Wheat	nucleus	39.85	31.95
KXG40355	Sorghum	nucleus, plastid	37.56	31.5
TraesCS5A01G558200.1	Wheat	nucleus, plastid	37.56	31.34
TraesCSU01G029700.1	Wheat	nucleus	37.56	31.26
GSMUA_Achr8P11770_001	Banana	nucleus	8.09	30.99
TraesCS4B01G396900.1	Wheat	nucleus	32.52	30.78
HORVU4Hr1G089120.1	Barley	nucleus, plastid	36.79	30.39
Zm00001d027335_P001	Maize	nucleus	36.95	29.91
KRG96146	Soybean	nucleus	23.36	26.47
KRH67857	Soybean	nucleus	23.21	26.12
KRH34074	Soybean	nucleus	23.05	25.99
KRH32666	Soybean	nucleus	23.05	25.42
KRG96954	Soybean	nucleus	22.9	25.0
KRH68714	Soybean	nucleus	23.36	24.56
KRH34733	Soybean	nucleus	19.69	23.8
KRG92051	Soybean	nucleus	19.24	23.46
KRG92655	Soybean	nucleus	23.51	22.95

Protein Annotations

EMBL:ACUP02010198	EnsemblPlants:KRH08699	EnsemblPlantsGene:GLYMA_16G167600	EntrezGene:100804788	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837
PFscan:PS50090	ProteinID:KRH08699	ProteinID:KRH08699.1	SEG:seg	SMART:SM00717	UniParc:UPI000233AA7C
UniProt:K7MHS2	MapMan:15.5.20	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:32731192..32735019

Molecular Weight (calculated)

72708.8 Da

IEP (calculated)

4.956

GRAVY (calculated)

-0.940

Length

655 amino acids

Sequence
(BLAST)

001: MLGDSAVLGT GGGGSGDAVA APPPAASGGA HDGGVDGGDG GGGGSNSGDD RVEEGERSFG GNRWPKQETL ALLKIRSDMD VAFRDASVKG PLWEEVSRKL
101: AELGYNRNAK KCKEKFENVY KYHKRTKEGR SGKSEGKTYR FFDQLQALEN NPAIHGKQSP TPPKPPPQTT ALSATPVSIV VTTTTTTPSS IIMPLPLPPV
201: SNNNNNTTVP STTSLPMPQS ILNITPPSTL NITIPSFPPS NPTTYFPTQT PNPTSNNNNN PPSTITPPSF PNFPADLLSN SSSSSTSSEE TPTTEARGRK
301: RKRKWKDFFE RLMKEVIEKQ EELQRRFLEA IEKREQERVV REEAWRMQEM QRINREREIL AQERSIAAAK DAAVMTFLQK IAEHQQQETI NLEPALNNNS
401: ITVVPQQPVP QATPTSTPTP QQAQTTTVPE APQVQPLVPQ LQQQQQIVVS NVEINKADNN GENLMMEASS SRWPKVEVQA LINLRTSLET KYQESGPKGP
501: LWEEISALMR KMGYNRNAKR CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLEALYR EKNKGEGQMK PESMMAPLMV QPEQQWPPQT TLVVPPEVTM
601: GDTQNDPMDR QYHEENEDDE DDKEIGDEDE DEDDEGGDNY EIVASKPATA DASGE

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.