CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92655	Soybean	nucleus	89.16	77.2
KRG96954	Soybean	nucleus	59.72	57.83
KRH68714	Soybean	nucleus	60.59	56.5
VIT_14s0030g01860.t01	Wine grape	plastid	51.64	48.78
CDX86194	Canola	nucleus	40.79	38.85
Bra009994.1-P	Field mustard	nucleus	40.79	38.85
CDY05590	Canola	nucleus	39.93	38.8
CDY52482	Canola	nucleus	40.28	38.61
AT5G28300.1	Thale cress	nucleus	40.62	38.13
CDY52502	Canola	nucleus	39.07	38.02
Bra020607.1-P	Field mustard	nucleus	39.59	37.83
KRH35148	Soybean	cytosol, mitochondrion, nucleus	10.33	30.46
KRH53849	Soybean	nucleus	23.06	26.96
KRH38181	Soybean	nucleus	22.72	26.94
KRH64101	Soybean	nucleus	22.55	26.2
KRH11595	Soybean	nucleus	14.46	24.85
KRH36613	Soybean	nucleus	14.46	24.85
KRH70308	Soybean	nucleus	25.3	23.3
KRG91649	Soybean	nucleus	25.65	23.14
KRH08699	Soybean	nucleus	25.99	23.05
KRH70307	Soybean	nucleus	23.06	22.37
Os02t0104500-01	Rice	nucleus	18.24	22.08
KRH35149	Soybean	nucleus	25.3	22.04
KRG96146	Soybean	nucleus	21.69	21.8
KRH08698	Soybean	nucleus	22.89	21.59
KRH67857	Soybean	nucleus	21.34	21.31
KRG91651	Soybean	nucleus	23.06	21.27
GSMUA_Achr7P04610_001	Banana	nucleus	17.56	21.07
GSMUA_AchrUn_...	Banana	nucleus	7.57	20.56
KRH32666	Soybean	nucleus	20.83	20.37
PGSC0003DMT400080676	Potato	nucleus	16.01	19.96
Zm00001d014938_P001	Maize	nucleus	22.03	19.28
GSMUA_Achr1P24120_001	Banana	nucleus	21.34	18.54
Zm00001d054080_P001	Maize	nucleus	22.2	18.07
KRH34733	Soybean	nucleus	16.52	17.71
EES06104	Sorghum	nucleus	22.55	17.7
KRG92051	Soybean	nucleus	16.35	17.69
KRH35147	Soybean	nucleus	8.61	17.54
HORVU0Hr1G014900.1	Barley	nucleus	21.34	17.54
TraesCS6A01G013200.2	Wheat	nucleus	22.72	17.53
TraesCS6D01G016300.1	Wheat	nucleus	22.72	17.44
TraesCS6B01G020100.1	Wheat	nucleus	22.72	17.35
Solyc08g061910.2.1	Tomato	nucleus	6.88	16.0
GSMUA_AchrUn_...	Banana	nucleus	12.22	15.14
GSMUA_AchrUn_...	Banana	nucleus	15.66	13.04

Protein Annotations

EMBL:ACUP02006573	EnsemblPlants:KRH34074	EnsemblPlantsGene:GLYMA_10G161200	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
PANTHER:PTHR21654	PANTHER:PTHR21654:SF22	PFAM:PF13837	PFscan:PS50090	ProteinID:KRH34074	ProteinID:KRH34074.1
SEG:seg	UniParc:UPI00023CDB90	UniProt:I1LBK5	MapMan:15.5.20	:	:

Description

hypothetical protein

Coordinates

chr10:+:39537021..39539529

Molecular Weight (calculated)

67078.2 Da

IEP (calculated)

6.771

GRAVY (calculated)

-1.085

Length

581 amino acids

Sequence
(BLAST)

001: MFDGVPDQFH QFITPRTSQP LHLPFPLHAS GTPNTTFPSN FDPYNNPSHQ LPLQPNNLLH PLHHKDEEKE ENTTTVPMNF EIQRDQRQQL PELIDPWTTD
101: EVLTLLRIRS SMESWFPELT WEHVSRKLAE LGYKRSAEKC KEKFEEESRY FNNNINYAKN NNNSTSNYRF LSELEQLYHQ QGSSGDHLEK MTQPPLQKQG
201: RMDHHALELE EEEGDSRNVI VDASVTKIQS DEALAVEKIT KDRKRKRSDR FEMFKGFCES IVHKMMTQQE EMHNKLLEDM MKRDEEKFTR EEAWKKQEME
301: KMNKELEMMA REQAVAGDRQ AKIIQILNKF SATTSSPASH TLKKVNTHIS QNPNPSQTEN PTLSVAQDTL IPSTSSTSTP APAPPQNPSS CSLNSQNNNH
401: INNNIPVEKN SILNKGSSSN EKDDVGRRWP KDEVLALINL RCTSVNNNNN NEEKEGNNKV PLWERISQGM SELRYKRSAK RCKEKWENIN KYFRKTKDIT
501: KKRSLDSRTC PYFHQLSSLY NQGKLVLQSE SHLNNTPPDQ NPEQVKPDQT TQAHESSSQV GSGSGFSVQQ QQVPSLDFDQ F

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.