Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G013200.2 | Wheat | nucleus | 94.85 | 95.35 |
| TraesCS6B01G020100.1 | Wheat | nucleus | 95.51 | 95.01 |
| HORVU0Hr1G014900.1 | Barley | nucleus | 83.88 | 89.82 |
| Zm00001d014938_P001 | Maize | nucleus | 65.13 | 74.25 |
| EES06104 | Sorghum | nucleus | 72.13 | 73.78 |
| Zm00001d054080_P001 | Maize | nucleus | 69.35 | 73.53 |
| Os02t0104500-01 | Rice | nucleus | 45.57 | 71.88 |
| GSMUA_Achr7P04610_001 | Banana | nucleus | 31.44 | 49.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.85 | 48.19 |
| GSMUA_Achr1P24120_001 | Banana | nucleus | 39.5 | 44.69 |
| VIT_04s0008g01850.t01 | Wine grape | nucleus | 32.63 | 38.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.51 | 33.64 |
| PGSC0003DMT400080676 | Potato | nucleus | 15.46 | 25.11 |
| TraesCS6D01G222500.1 | Wheat | nucleus | 21.14 | 23.84 |
| KRH34074 | Soybean | nucleus | 17.44 | 22.72 |
| TraesCS2D01G387100.1 | Wheat | nucleus | 22.32 | 22.68 |
| KRG96954 | Soybean | nucleus | 17.31 | 21.83 |
| CDY52482 | Canola | nucleus | 17.04 | 21.29 |
| CDY52502 | Canola | nucleus | 16.78 | 21.27 |
| KRH68714 | Soybean | nucleus | 17.31 | 21.03 |
| Bra009994.1-P | Field mustard | nucleus | 16.91 | 20.98 |
| CDX86194 | Canola | nucleus | 16.91 | 20.98 |
| CDY05590 | Canola | nucleus | 16.51 | 20.9 |
| Bra020607.1-P | Field mustard | nucleus | 16.64 | 20.72 |
| AT5G28300.1 | Thale cress | nucleus | 16.91 | 20.68 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 22.19 | 20.56 |
| KRG92655 | Soybean | nucleus | 17.17 | 19.37 |
| Solyc08g061910.2.1 | Tomato | nucleus | 6.34 | 19.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.91 | 18.34 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G016300.1 | EnsemblPlantsGene:TraesCS6D01G016300 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF31 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | SMART:SM00717 |
| TIGR:cd12203 | MapMan:15.5.20 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:6571361..6574607
Molecular Weight (calculated)
79710.3 Da
IEP (calculated)
6.427
GRAVY (calculated)
-0.797
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSGYGGVSE FQQFIMDGGF AMAAAPQQQA QAAAAAAAAA AAAAAGGQEL GAPFRYQPLH HHAMQHHHQQ QQQHPPQMPP HFAHFGVAPA AAAAAGGIPF
101: TQQFLNHQAA AAGHHHQQQH HLQLFHHEQQ QQQHHKPPQQ PPARWAPQQQ HHQHPHQQQQ HHHHQLGLDV EAAAVPESSR ATSGGAAPPG VPPFLAAAMN
201: FKLAVDPGGG SGATDDALND GTGGGGGAGS GMMLHGGGGG DDEAATESRL RRWTGEEETS IKEPTWRPLD IDYIHSTSSS SKRKEKVATP ESPAPVAPAA
301: NYFKKAGGGD DNAGAAASAG GGGGNYKLFS ELEAIYKPGS GGGGGGAGQT GSGSGLTGDD NAILPPPSMA DLPGGAPAAA VDAPQANTSE TSAGEDAPAV
401: LQPQPPPPPL ASVGEARRKR KRRRQEQQQQ LTASASFFEQ LVQRLIEHQE GLHRQFLDAM ERRERERAAR DEAWRRQEAD KFAREAAARA QDRASAAARE
501: TAIIAYLEKL SGETITLPPP AAANPAAPTS ADDATSHDAG RELVPYECGE LSLPLMSSSS RWPKHEVEAL IRVRSGLDNR FQEPGLKGPL WEEVSVRMAA
601: AGYGGRSAKR CKEKWENINK YFRKAKESGK KRPAHAKTCP YFDELDRLYS RSAHGSGASS AAGNTSAKTN ANAIAGADNA ANKASSELLD AVVKYPADTH
701: YGPPPGFPTD GDRGGNAETK DDGEGDVDMG RASGRAGDEH DDEAGQSHGH DDDDDDH
101: TQQFLNHQAA AAGHHHQQQH HLQLFHHEQQ QQQHHKPPQQ PPARWAPQQQ HHQHPHQQQQ HHHHQLGLDV EAAAVPESSR ATSGGAAPPG VPPFLAAAMN
201: FKLAVDPGGG SGATDDALND GTGGGGGAGS GMMLHGGGGG DDEAATESRL RRWTGEEETS IKEPTWRPLD IDYIHSTSSS SKRKEKVATP ESPAPVAPAA
301: NYFKKAGGGD DNAGAAASAG GGGGNYKLFS ELEAIYKPGS GGGGGGAGQT GSGSGLTGDD NAILPPPSMA DLPGGAPAAA VDAPQANTSE TSAGEDAPAV
401: LQPQPPPPPL ASVGEARRKR KRRRQEQQQQ LTASASFFEQ LVQRLIEHQE GLHRQFLDAM ERRERERAAR DEAWRRQEAD KFAREAAARA QDRASAAARE
501: TAIIAYLEKL SGETITLPPP AAANPAAPTS ADDATSHDAG RELVPYECGE LSLPLMSSSS RWPKHEVEAL IRVRSGLDNR FQEPGLKGPL WEEVSVRMAA
601: AGYGGRSAKR CKEKWENINK YFRKAKESGK KRPAHAKTCP YFDELDRLYS RSAHGSGASS AAGNTSAKTN ANAIAGADNA ANKASSELLD AVVKYPADTH
701: YGPPPGFPTD GDRGGNAETK DDGEGDVDMG RASGRAGDEH DDEAGQSHGH DDDDDDH
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.