Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04390.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61764 | Canola | nucleus | 93.88 | 67.65 |
| Bra028791.1-P | Field mustard | nucleus | 93.06 | 64.77 |
| CDY41350 | Canola | nucleus, plastid | 60.82 | 59.13 |
| CDY44852 | Canola | nucleus | 77.14 | 58.15 |
| CDY11288 | Canola | nucleus | 77.96 | 58.05 |
| CDX70228 | Canola | nucleus | 76.73 | 58.02 |
| CDY58436 | Canola | nucleus | 79.59 | 57.35 |
| CDX89591 | Canola | nucleus | 47.35 | 55.77 |
| AT5G04390.1 | Thale cress | nucleus | 80.0 | 54.14 |
| CDY05027 | Canola | nucleus | 35.1 | 51.5 |
| CDY42128 | Canola | nucleus | 43.27 | 47.53 |
| CDY00945 | Canola | nucleus | 64.49 | 46.75 |
| CDY08602 | Canola | nucleus | 64.49 | 46.75 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 11.02 | 39.13 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 11.02 | 39.13 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 11.02 | 39.13 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 11.84 | 37.66 |
| KRH67769 | Soybean | nucleus | 33.06 | 37.5 |
| CDY04582 | Canola | nucleus | 22.86 | 37.33 |
| CDY15775 | Canola | nucleus | 22.86 | 37.33 |
| CDY31725 | Canola | nucleus | 22.45 | 37.16 |
| CDX77198 | Canola | nucleus | 22.45 | 37.16 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 11.43 | 36.36 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 10.2 | 36.23 |
| CDY11027 | Canola | nucleus | 33.06 | 35.06 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 11.02 | 35.06 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 11.02 | 35.06 |
| CDX91362 | Canola | nucleus | 25.71 | 35.0 |
| CDX74961 | Canola | nucleus | 25.71 | 35.0 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 23.67 | 34.73 |
| CDX93380 | Canola | nucleus | 25.31 | 34.64 |
| CDY70037 | Canola | nucleus | 35.1 | 34.13 |
| CDY18446 | Canola | nucleus | 24.9 | 33.89 |
| CDY30501 | Canola | nucleus | 34.29 | 33.6 |
| CDY65692 | Canola | nucleus | 21.63 | 33.12 |
| CDY31593 | Canola | nucleus | 21.63 | 33.12 |
| CDX80226 | Canola | nucleus | 21.63 | 32.92 |
| CDX71073 | Canola | nucleus | 21.22 | 32.91 |
| CDX88724 | Canola | nucleus | 21.22 | 32.7 |
| CDX71375 | Canola | nucleus | 33.88 | 32.55 |
| CDY09252 | Canola | nucleus | 20.82 | 32.48 |
| CDY04886 | Canola | nucleus | 35.51 | 32.46 |
| CDY04544 | Canola | nucleus | 33.88 | 32.42 |
| CDY65670 | Canola | nucleus | 23.67 | 32.4 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 36.33 | 32.25 |
| CDY52747 | Canola | nucleus | 22.04 | 32.14 |
| CDY07790 | Canola | nucleus | 23.67 | 32.04 |
| CDY11255 | Canola | nucleus | 33.06 | 31.89 |
| CDY44371 | Canola | nucleus | 34.69 | 31.72 |
| CDX70302 | Canola | nucleus | 34.29 | 31.7 |
| CDY07578 | Canola | nucleus | 21.63 | 31.55 |
| CDY10376 | Canola | nucleus | 33.88 | 31.32 |
| CDY30857 | Canola | nucleus | 21.22 | 31.14 |
| CDX80870 | Canola | nucleus | 32.24 | 31.1 |
| CDX76199 | Canola | nucleus | 22.04 | 31.03 |
| CDY30924 | Canola | nucleus | 20.82 | 30.0 |
| PGSC0003DMT400009871 | Potato | nucleus | 36.33 | 29.87 |
| CDX68366 | Canola | nucleus | 21.22 | 29.38 |
| Solyc09g008440.1.1 | Tomato | nucleus | 37.14 | 29.35 |
| KRH19960 | Soybean | nucleus | 33.88 | 28.82 |
| Zm00001d036330_P001 | Maize | nucleus | 28.57 | 28.46 |
| CDX99130 | Canola | nucleus | 22.04 | 28.12 |
| CDY58688 | Canola | nucleus | 10.2 | 28.09 |
| KRH32562 | Soybean | nucleus | 33.88 | 27.85 |
| Os04t0162500-01 | Rice | vacuole | 32.24 | 27.34 |
| KXG20985 | Sorghum | nucleus, plastid | 30.2 | 26.91 |
| CDY30925 | Canola | nucleus | 18.37 | 26.63 |
| CDX86044 | Canola | nucleus | 22.04 | 26.47 |
| Zm00001d051865_P001 | Maize | nucleus | 32.24 | 23.94 |
| KRG96047 | Soybean | mitochondrion | 35.1 | 23.82 |
| Zm00001d004439_P001 | Maize | nucleus | 34.69 | 23.68 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 33.06 | 23.55 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 34.29 | 23.27 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 34.69 | 23.16 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 34.29 | 23.01 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 34.29 | 22.95 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 31.43 | 22.51 |
| Zm00001d024866_P001 | Maize | nucleus | 33.47 | 22.4 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 31.43 | 21.1 |
| EES07783 | Sorghum | nucleus | 33.47 | 20.97 |
| EES10410 | Sorghum | nucleus | 34.29 | 20.95 |
Protein Annotations
| EnsemblPlants:CDY71034 | EnsemblPlantsGene:GSBRNA2T00010742001 | GO:A0A078JW83 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF325 | PFAM:PF13912 |
| PFscan:PS50157 | ProteinID:CDY71034 | ProteinID:CDY71034.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EDF31A | UniProt:A0A078JW83 | MapMan:15.5.15 | : | : |
Description
BnaCnng71010DBnaCnng71010D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JW83]
Coordinates
chrLK044224:+:2..825
Molecular Weight (calculated)
27106.7 Da
IEP (calculated)
8.569
GRAVY (calculated)
-0.628
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: RASSSASWSS NNNPTLKAEE DEEDLDIASC LILHSQGHSL PQLKIPNHET NNNNTYKFSS RRFLETSSSN GGGKACHYVY QCKTCDRTFS SFQALGGHRA
101: SHKKRKATSF YSNLDHLKKN IYENDSLATT TTIYNNSKNR SLVHECRICG AEFTAGQALG GHMRRHRGAV VVAPTVTVAL AAANTELSLS SMSFDQISTK
201: RAKKMVVSLD LDLNLPAPED ENRTKQRDEP KCLVLSPPTL VDCHY
101: SHKKRKATSF YSNLDHLKKN IYENDSLATT TTIYNNSKNR SLVHECRICG AEFTAGQALG GHMRRHRGAV VVAPTVTVAL AAANTELSLS SMSFDQISTK
201: RAKKMVVSLD LDLNLPAPED ENRTKQRDEP KCLVLSPPTL VDCHY
001: MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q7G8T1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.