Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011931.1-P | Field mustard | cytosol | 98.67 | 98.67 |
| CDY04582 | Canola | nucleus | 98.0 | 98.0 |
| CDY31725 | Canola | nucleus | 91.33 | 92.57 |
| CDX77198 | Canola | nucleus | 91.33 | 92.57 |
| AT2G28710.1 | Thale cress | nucleus | 90.0 | 86.54 |
| CDY09252 | Canola | nucleus | 46.0 | 43.95 |
| CDY65692 | Canola | nucleus | 45.33 | 42.5 |
| CDX71073 | Canola | nucleus | 44.67 | 42.41 |
| CDX88724 | Canola | nucleus | 44.67 | 42.14 |
| CDY31593 | Canola | nucleus | 42.67 | 40.0 |
| CDX80226 | Canola | nucleus | 42.67 | 39.75 |
| PGSC0003DMT400077933 | Potato | nucleus | 41.33 | 39.49 |
| CDY30924 | Canola | nucleus | 42.67 | 37.65 |
| CDX93380 | Canola | nucleus | 44.67 | 37.43 |
| CDX91362 | Canola | nucleus | 44.67 | 37.22 |
| CDY30857 | Canola | nucleus | 41.33 | 37.13 |
| CDY18446 | Canola | nucleus | 44.0 | 36.67 |
| CDX74961 | Canola | nucleus | 43.33 | 36.11 |
| CDY52747 | Canola | nucleus | 40.0 | 35.71 |
| CDX68366 | Canola | nucleus | 42.0 | 35.59 |
| CDY65670 | Canola | nucleus | 42.0 | 35.2 |
| CDY07578 | Canola | nucleus | 39.33 | 35.12 |
| CDY07790 | Canola | nucleus | 42.0 | 34.81 |
| CDX76199 | Canola | nucleus | 39.33 | 33.91 |
| CDX99130 | Canola | nucleus | 43.33 | 33.85 |
| PGSC0003DMT400090011 | Potato | nucleus | 34.67 | 33.55 |
| CDY30925 | Canola | nucleus | 36.67 | 32.54 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 21.33 | 32.0 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 23.33 | 31.82 |
| Solyc03g093870.1.1 | Tomato | nucleus | 36.67 | 31.61 |
| CDY58688 | Canola | nucleus | 18.67 | 31.46 |
| CDX86044 | Canola | nucleus | 42.67 | 31.37 |
| PGSC0003DMT400021456 | Potato | nucleus | 38.0 | 29.69 |
| CDY11027 | Canola | nucleus | 37.33 | 24.24 |
| CDY30501 | Canola | nucleus | 39.33 | 23.6 |
| CDY70037 | Canola | nucleus | 39.33 | 23.41 |
| CDY04544 | Canola | nucleus | 39.33 | 23.05 |
| CDY71034 | Canola | nucleus | 37.33 | 22.86 |
| CDY44371 | Canola | nucleus | 40.67 | 22.76 |
| CDX71375 | Canola | nucleus | 38.67 | 22.75 |
| CDY41350 | Canola | nucleus, plastid | 38.0 | 22.62 |
| CDX80870 | Canola | nucleus | 38.0 | 22.44 |
| CDY11255 | Canola | nucleus | 38.0 | 22.44 |
| CDY04886 | Canola | nucleus | 40.0 | 22.39 |
| CDX70302 | Canola | nucleus | 38.67 | 21.89 |
| CDY10376 | Canola | nucleus | 38.67 | 21.89 |
| CDY11288 | Canola | nucleus | 40.0 | 18.24 |
| CDY58436 | Canola | nucleus | 40.0 | 17.65 |
| CDY61764 | Canola | nucleus | 39.33 | 17.35 |
| CDY44852 | Canola | nucleus | 37.33 | 17.23 |
| CDY08602 | Canola | nucleus | 38.67 | 17.16 |
| CDX70228 | Canola | nucleus | 36.67 | 16.98 |
| CDY00945 | Canola | nucleus | 38.0 | 16.86 |
| CDX89591 | Canola | nucleus | 21.33 | 15.38 |
| CDY05027 | Canola | nucleus | 16.67 | 14.97 |
| CDY42128 | Canola | nucleus | 20.0 | 13.45 |
Protein Annotations
| EnsemblPlants:CDY15775 | EnsemblPlantsGene:GSBRNA2T00090045001 | Gene3D:3.30.160.60 | GO:A0A078FMV0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY15775 | ProteinID:CDY15775.1 | ScanProsite:PS00028 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EB0FFC | UniProt:A0A078FMV0 | MapMan:15.5.15 | : | : |
Description
BnaC04g15490DBnaC04g15490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMV0]
Coordinates
chrLK032057:+:581926..582378
Molecular Weight (calculated)
16357.0 Da
IEP (calculated)
10.403
GRAVY (calculated)
-0.436
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEREMEMI NKMASCLIFL SKAHQHDTKG RVFACKTCNK EFSSFQALGG HRASHRRSAA LEGHAPPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR
101: GGGASRSLAP APVTMKKTGG GNAKRVLCLD LNLTPVENED LKLELGRLIF
101: GGGASRSLAP APVTMKKTGG GNAKRVLCLD LNLTPVENED LKLELGRLIF
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.