Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31725 | Canola | nucleus | 85.9 | 90.54 |
| CDX77198 | Canola | nucleus | 85.9 | 90.54 |
| Bra035678.1-P | Field mustard | nucleus | 85.9 | 90.54 |
| CDY15775 | Canola | nucleus | 86.54 | 90.0 |
| Bra011931.1-P | Field mustard | cytosol | 85.9 | 89.33 |
| CDY04582 | Canola | nucleus | 85.26 | 88.67 |
| AT5G59820.1 | Thale cress | nucleus | 44.23 | 42.59 |
| PGSC0003DMT400077933 | Potato | nucleus | 40.38 | 40.13 |
| AT3G46080.1 | Thale cress | nucleus | 41.67 | 39.63 |
| AT3G46090.1 | Thale cress | nucleus | 41.67 | 38.69 |
| AT3G46070.1 | Thale cress | nucleus | 41.67 | 38.24 |
| AT2G37430.1 | Thale cress | nucleus | 41.03 | 35.96 |
| AT3G53600.1 | Thale cress | nucleus | 39.74 | 35.43 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 24.36 | 34.55 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 21.79 | 34.0 |
| PGSC0003DMT400090011 | Potato | nucleus | 32.69 | 32.9 |
| Solyc03g093870.1.1 | Tomato | nucleus | 35.9 | 32.18 |
| PGSC0003DMT400021456 | Potato | nucleus | 35.26 | 28.65 |
| AT5G03510.1 | Thale cress | nucleus | 40.38 | 21.58 |
| AT2G28200.1 | Thale cress | nucleus | 38.46 | 20.98 |
| AT5G04390.1 | Thale cress | nucleus | 38.46 | 16.57 |
| AT3G10470.1 | Thale cress | nucleus | 39.74 | 15.58 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:817420 | UniProt:A0A178VQX8 | ProteinID:AAD24362.1 | ProteinID:AEC08162.1 |
| ArrayExpress:AT2G28710 | EnsemblPlantsGene:AT2G28710 | RefSeq:AT2G28710 | TAIR:AT2G28710 | RefSeq:AT2G28710-TAIR-G | EnsemblPlants:AT2G28710.1 |
| TAIR:AT2G28710.1 | Unigene:At.66263 | EMBL:BT029330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR013087 |
| RefSeq:NP_180439.1 | ProteinID:OAP08739.1 | PFAM:PF13912 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009047 | PO:PO:0020038 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | UniProt:Q9SI97 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI00000A1A3E | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
Coordinates
chr2:+:12322386..12323584
Molecular Weight (calculated)
16731.4 Da
IEP (calculated)
10.492
GRAVY (calculated)
-0.465
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.