Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71073 | Canola | nucleus | 86.42 | 88.61 |
| CDY09252 | Canola | nucleus | 85.19 | 87.9 |
| CDX88724 | Canola | nucleus | 85.8 | 87.42 |
| Bra006691.1-P | Field mustard | nucleus | 85.8 | 87.42 |
| Bra006692.1-P | Field mustard | nucleus | 85.8 | 87.42 |
| CDY65692 | Canola | nucleus | 85.8 | 86.88 |
| CDY31593 | Canola | nucleus | 85.19 | 86.25 |
| CDX80226 | Canola | nucleus | 84.57 | 85.09 |
| Bra002528.1-P | Field mustard | nucleus | 83.95 | 85.0 |
| Bra020284.1-P | Field mustard | nucleus | 57.41 | 83.04 |
| AT3G46080.1 | Thale cress | nucleus | 68.52 | 67.68 |
| AT3G46090.1 | Thale cress | nucleus | 66.05 | 63.69 |
| AT3G46070.1 | Thale cress | nucleus | 61.11 | 58.24 |
| AT2G28710.1 | Thale cress | nucleus | 42.59 | 44.23 |
| PGSC0003DMT400040144 | Potato | nucleus | 43.21 | 42.42 |
| PGSC0003DMT400040143 | Potato | nucleus | 42.59 | 41.57 |
| Solyc06g075780.1.1 | Tomato | nucleus | 38.89 | 40.91 |
| PGSC0003DMT400040142 | Potato | nucleus | 41.36 | 40.61 |
| PGSC0003DMT400040141 | Potato | nucleus | 42.59 | 40.59 |
| PGSC0003DMT400040206 | Potato | nucleus | 42.59 | 40.35 |
| KRH29844 | Soybean | nucleus, plastid | 35.8 | 40.28 |
| Solyc11g073060.1.1 | Tomato | nucleus | 38.27 | 40.26 |
| KRH24840 | Soybean | nucleus | 37.04 | 38.46 |
| PGSC0003DMT400040207 | Potato | nucleus | 38.89 | 38.41 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 38.89 | 38.41 |
| KRH23029 | Soybean | nucleus | 38.89 | 36.84 |
| KRH10294 | Soybean | nucleus | 38.27 | 36.05 |
| AT2G37430.1 | Thale cress | nucleus | 37.65 | 34.27 |
| AT3G53600.1 | Thale cress | nucleus | 34.57 | 32.0 |
| AT5G03510.1 | Thale cress | nucleus | 35.19 | 19.52 |
| AT2G28200.1 | Thale cress | nucleus | 33.95 | 19.23 |
| AT5G04390.1 | Thale cress | nucleus | 34.57 | 15.47 |
| AT3G10470.1 | Thale cress | nucleus | 35.19 | 14.32 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:836103 | UniProt:A0A178UHQ4 | ProteinID:AED97237.1 | ArrayExpress:AT5G59820 |
| EnsemblPlantsGene:AT5G59820 | RefSeq:AT5G59820 | TAIR:AT5G59820 | RefSeq:AT5G59820-TAIR-G | EnsemblPlants:AT5G59820.1 | TAIR:AT5G59820.1 |
| EMBL:AY050915 | EMBL:AY088036 | EMBL:AY133818 | ProteinID:BAB08349.1 | ProteinID:CAA67232.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009408 | GO:GO:0009409 |
| GO:GO:0009416 | GO:GO:0009611 | GO:GO:0009628 | GO:GO:0009631 | GO:GO:0009643 | GO:GO:0009719 |
| GO:GO:0009987 | GO:GO:0010200 | GO:GO:0010224 | GO:GO:0042538 | GO:GO:0043565 | GO:GO:0046872 |
| InterPro:IPR013087 | RefSeq:NP_200790.1 | ProteinID:OAO93189.1 | PFAM:PF13912 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | UniProt:Q42410 | Symbol:RHL41 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI00000A29AB | EMBL:X98673 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : |
Description
ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
Coordinates
chr5:+:24102814..24103794
Molecular Weight (calculated)
17333.2 Da
IEP (calculated)
10.188
GRAVY (calculated)
-0.188
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.