Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G46090.1 | Thale cress | nucleus | 89.63 | 87.5 |
| AT5G59820.1 | Thale cress | nucleus | 67.68 | 68.52 |
| AT3G46070.1 | Thale cress | nucleus | 70.73 | 68.24 |
| Solyc06g075780.1.1 | Tomato | nucleus | 40.85 | 43.51 |
| PGSC0003DMT400040143 | Potato | nucleus | 43.9 | 43.37 |
| PGSC0003DMT400040144 | Potato | nucleus | 43.29 | 43.03 |
| Solyc11g073060.1.1 | Tomato | nucleus | 39.63 | 42.21 |
| AT2G28710.1 | Thale cress | nucleus | 39.63 | 41.67 |
| PGSC0003DMT400040142 | Potato | nucleus | 41.46 | 41.21 |
| PGSC0003DMT400040207 | Potato | nucleus | 40.24 | 40.24 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 40.24 | 40.24 |
| PGSC0003DMT400040141 | Potato | nucleus | 41.46 | 40.0 |
| PGSC0003DMT400040206 | Potato | nucleus | 41.46 | 39.77 |
| KRH29844 | Soybean | nucleus, plastid | 34.15 | 38.89 |
| KRH23029 | Soybean | nucleus | 40.24 | 38.6 |
| KRH24840 | Soybean | nucleus | 35.98 | 37.82 |
| KRH10294 | Soybean | nucleus | 39.02 | 37.21 |
| AT2G37430.1 | Thale cress | nucleus | 35.98 | 33.15 |
| AT3G53600.1 | Thale cress | nucleus | 31.1 | 29.14 |
| AT2G28200.1 | Thale cress | nucleus | 33.54 | 19.23 |
| AT5G03510.1 | Thale cress | nucleus | 33.54 | 18.84 |
| AT5G04390.1 | Thale cress | nucleus | 34.15 | 15.47 |
| AT3G10470.1 | Thale cress | nucleus | 34.15 | 14.07 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:823751 | EMBL:AB493640 | ProteinID:AEE78110.1 | ArrayExpress:AT3G46080 |
| EnsemblPlantsGene:AT3G46080 | RefSeq:AT3G46080 | TAIR:AT3G46080 | RefSeq:AT3G46080-TAIR-G | EnsemblPlants:AT3G46080.1 | TAIR:AT3G46080.1 |
| ProteinID:CAB90935.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010200 |
| GO:GO:0046872 | InterPro:IPR013087 | RefSeq:NP_190194.1 | PFAM:PF13912 | PO:PO:0000293 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | UniProt:Q9LX85 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI00000A0FFC | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
ZAT8Zinc finger protein ZAT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX85]
Coordinates
chr3:-:16922514..16923299
Molecular Weight (calculated)
17740.5 Da
IEP (calculated)
9.828
GRAVY (calculated)
-0.302
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.