Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11027 | Canola | nucleus | 65.75 | 83.12 |
| CDY10376 | Canola | nucleus | 75.34 | 83.02 |
| Bra009525.1-P | Field mustard | nucleus | 75.34 | 83.02 |
| CDX70302 | Canola | nucleus | 73.97 | 81.51 |
| Bra028831.1-P | Field mustard | nucleus | 74.32 | 80.97 |
| CDY44371 | Canola | nucleus | 73.97 | 80.6 |
| CDY04886 | Canola | nucleus | 73.97 | 80.6 |
| CDX80870 | Canola | nucleus | 69.52 | 79.92 |
| CDY11255 | Canola | nucleus | 69.18 | 79.53 |
| Bra005766.1-P | Field mustard | nucleus | 75.0 | 79.35 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 42.47 | 44.93 |
| KRH67769 | Soybean | nucleus | 31.16 | 42.13 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 10.96 | 41.56 |
| AT2G28710.1 | Thale cress | nucleus | 21.58 | 40.38 |
| KRH19960 | Soybean | nucleus | 39.04 | 39.58 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 22.6 | 39.52 |
| PGSC0003DMT400009871 | Potato | nucleus | 39.73 | 38.93 |
| KRH32562 | Soybean | nucleus | 38.36 | 37.58 |
| Solyc09g008440.1.1 | Tomato | nucleus | 39.73 | 37.42 |
| AT2G28200.1 | Thale cress | nucleus | 35.96 | 36.71 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 8.56 | 36.23 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 8.56 | 36.23 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 8.56 | 36.23 |
| AT2G37430.1 | Thale cress | nucleus | 21.92 | 35.96 |
| AT5G59820.1 | Thale cress | nucleus | 19.52 | 35.19 |
| Zm00001d036330_P001 | Maize | nucleus | 29.45 | 34.96 |
| AT3G53600.1 | Thale cress | nucleus | 20.21 | 33.71 |
| AT3G46080.1 | Thale cress | nucleus | 18.84 | 33.54 |
| KXG20985 | Sorghum | nucleus, plastid | 31.51 | 33.45 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 7.88 | 33.33 |
| AT3G46090.1 | Thale cress | nucleus | 19.18 | 33.33 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 8.56 | 32.47 |
| Zm00001d004439_P001 | Maize | nucleus | 38.36 | 31.2 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 8.22 | 31.17 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 8.22 | 31.17 |
| AT5G04390.1 | Thale cress | nucleus | 38.01 | 30.66 |
| KRG96047 | Soybean | mitochondrion | 37.33 | 30.19 |
| AT3G46070.1 | Thale cress | nucleus | 17.12 | 29.41 |
| Zm00001d051865_P001 | Maize | nucleus | 33.22 | 29.39 |
| Os04t0162500-01 | Rice | vacuole | 28.77 | 29.07 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 33.56 | 28.49 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 32.88 | 28.07 |
| AT3G10470.1 | Thale cress | nucleus | 38.01 | 27.89 |
| Zm00001d024866_P001 | Maize | nucleus | 34.59 | 27.6 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 33.22 | 26.87 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 33.22 | 26.43 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 32.88 | 26.3 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 32.88 | 26.23 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 32.53 | 26.03 |
| EES10410 | Sorghum | nucleus | 35.62 | 25.94 |
| EES07783 | Sorghum | nucleus | 33.22 | 24.81 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:831818 | UniProt:A0A178U6H4 | EMBL:AB493734 | ProteinID:AED90616.1 | EMBL:AK176594 |
| ArrayExpress:AT5G03510 | EnsemblPlantsGene:AT5G03510 | RefSeq:AT5G03510 | TAIR:AT5G03510 | RefSeq:AT5G03510-TAIR-G | EnsemblPlants:AT5G03510.1 |
| TAIR:AT5G03510.1 | Unigene:At.33267 | ProteinID:CAB83312.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR013087 |
| RefSeq:NP_195971.1 | ProteinID:OAO89508.1 | PFAM:PF13912 | PO:PO:0000230 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF318 | UniProt:Q9LZD5 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00000A8411 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
Coordinates
chr5:+:880148..881347
Molecular Weight (calculated)
31530.3 Da
IEP (calculated)
7.779
GRAVY (calculated)
-0.425
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.