Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G404600.1 | Wheat | nucleus | 95.36 | 95.1 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 93.99 | 94.25 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 90.44 | 91.69 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 62.84 | 66.86 |
| Zm00001d051865_P001 | Maize | nucleus | 52.73 | 58.48 |
| EES07783 | Sorghum | nucleus | 57.38 | 53.71 |
| GSMUA_Achr8P12900_001 | Banana | nucleus | 29.23 | 52.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.87 | 44.54 |
| VIT_06s0061g00760.t01 | Wine grape | nucleus | 31.69 | 40.14 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 29.78 | 39.49 |
| KRG92135 | Soybean | nucleus | 34.43 | 38.53 |
| KRH67769 | Soybean | nucleus | 22.68 | 38.43 |
| CDY11027 | Canola | nucleus | 24.04 | 38.1 |
| TraesCS5D01G489800.1 | Wheat | nucleus | 16.12 | 37.58 |
| PGSC0003DMT400009871 | Potato | nucleus | 30.05 | 36.91 |
| TraesCS5D01G491700.1 | Wheat | nucleus | 13.39 | 35.77 |
| TraesCS5D01G491100.1 | Wheat | nucleus | 13.11 | 35.56 |
| KRH30555 | Soybean | nucleus | 29.51 | 35.06 |
| Solyc09g008440.1.1 | Tomato | nucleus | 29.51 | 34.84 |
| VIT_13s0019g05170.t01 | Wine grape | nucleus | 28.69 | 34.77 |
| TraesCS1D01G041700.1 | Wheat | nucleus | 18.03 | 34.74 |
| KRH19960 | Soybean | nucleus | 27.32 | 34.72 |
| PGSC0003DMT400001104 | Potato | nucleus | 27.6 | 34.71 |
| CDY04886 | Canola | nucleus | 25.41 | 34.7 |
| Bra028831.1-P | Field mustard | nucleus | 25.41 | 34.7 |
| CDX80870 | Canola | nucleus | 24.04 | 34.65 |
| TraesCS1D01G041500.1 | Wheat | nucleus | 17.76 | 34.57 |
| TraesCS1D01G041600.1 | Wheat | nucleus | 18.03 | 34.55 |
| CDY10376 | Canola | nucleus | 24.86 | 34.34 |
| Bra009525.1-P | Field mustard | nucleus | 24.86 | 34.34 |
| CDX70302 | Canola | nucleus | 24.86 | 34.34 |
| CDY71034 | Canola | nucleus | 22.95 | 34.29 |
| TraesCS4D01G204300.1 | Wheat | nucleus | 16.94 | 34.25 |
| CDY11255 | Canola | nucleus | 23.77 | 34.25 |
| KRH32562 | Soybean | nucleus | 27.87 | 34.23 |
| CDY41350 | Canola | nucleus, plastid | 23.5 | 34.13 |
| Solyc06g074800.1.1 | Tomato | nucleus | 30.33 | 34.05 |
| KRH34655 | Soybean | nucleus | 33.06 | 33.99 |
| KRH25111 | Soybean | nucleus, plastid | 29.23 | 33.97 |
| CDY44371 | Canola | nucleus | 24.86 | 33.96 |
| TraesCS5D01G490800.1 | Wheat | nucleus | 12.3 | 33.83 |
| TraesCS5D01G491300.1 | Wheat | nucleus | 12.3 | 33.83 |
| TraesCS5D01G026400.1 | Wheat | nucleus | 12.57 | 33.82 |
| TraesCS5D01G490900.1 | Wheat | nucleus | 12.57 | 33.82 |
| PGSC0003DMT400018457 | Potato | nucleus | 30.33 | 33.74 |
| Solyc11g066400.1.1 | Tomato | nucleus, plastid | 27.05 | 33.67 |
| TraesCS3D01G350100.1 | Wheat | nucleus | 18.58 | 33.66 |
| Bra034116.1-P | Field mustard | plastid | 25.14 | 33.09 |
| TraesCS5D01G490700.1 | Wheat | nucleus | 12.02 | 33.08 |
| AT5G03510.1 | Thale cress | nucleus | 26.23 | 32.88 |
| KRH22825 | Soybean | nucleus | 27.87 | 32.38 |
| Bra005766.1-P | Field mustard | nucleus | 24.32 | 32.25 |
| TraesCS5D01G490300.1 | Wheat | nucleus | 14.48 | 31.93 |
| KRH26537 | Soybean | nucleus, plastid | 27.05 | 31.63 |
| CDX70228 | Canola | nucleus | 27.87 | 31.48 |
| CDY44852 | Canola | nucleus | 27.87 | 31.38 |
| TraesCS5D01G026300.1 | Wheat | nucleus | 14.75 | 31.21 |
| TraesCS5D01G490600.1 | Wheat | nucleus | 14.48 | 31.18 |
| CDY11288 | Canola | nucleus | 27.87 | 31.0 |
| CDY61764 | Canola | nucleus | 28.69 | 30.88 |
| TraesCS3D01G350700.1 | Wheat | nucleus | 15.85 | 30.85 |
| TraesCS5D01G490500.1 | Wheat | nucleus | 14.21 | 30.59 |
| TraesCS5D01G490200.1 | Wheat | nucleus | 14.21 | 30.59 |
| TraesCS3D01G350200.1 | Wheat | nucleus | 17.21 | 30.58 |
| TraesCS5D01G490400.1 | Wheat | nucleus | 14.75 | 30.51 |
| CDY58436 | Canola | nucleus | 28.14 | 30.29 |
| TraesCS5D01G491500.1 | Wheat | nucleus | 14.21 | 30.23 |
| Bra009457.1-P | Field mustard | nucleus | 28.42 | 30.14 |
| AT5G04390.1 | Thale cress | nucleus | 29.78 | 30.11 |
| Bra005803.1-P | Field mustard | nucleus | 29.51 | 30.08 |
| TraesCS5D01G491600.1 | Wheat | nucleus | 14.21 | 30.06 |
| TraesCS5D01G491400.1 | Wheat | nucleus | 13.66 | 29.76 |
| CDY08602 | Canola | nucleus | 27.05 | 29.29 |
| Bra029843.1-P | Field mustard | nucleus | 25.96 | 29.23 |
| CDY00945 | Canola | nucleus | 26.78 | 28.99 |
| Bra028791.1-P | Field mustard | nucleus | 27.87 | 28.98 |
| TraesCS4D01G141500.1 | Wheat | nucleus | 12.57 | 28.93 |
| TraesCS5D01G491200.1 | Wheat | nucleus | 12.84 | 28.83 |
| TraesCS5D01G491000.1 | Wheat | nucleus | 13.93 | 28.65 |
| KRG96047 | Soybean | mitochondrion | 27.32 | 27.7 |
| Solyc05g055500.1.1 | Tomato | nucleus | 27.32 | 27.62 |
| AT3G10470.1 | Thale cress | nucleus | 29.78 | 27.39 |
| PGSC0003DMT400079773 | Potato | nucleus | 26.5 | 26.36 |
| CDX89591 | Canola | nucleus | 13.93 | 24.52 |
| CDY42128 | Canola | nucleus | 13.93 | 22.87 |
| CDY05027 | Canola | nucleus | 9.29 | 20.36 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G387900.1 | EnsemblPlantsGene:TraesCS6D01G387900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF329 | PFAM:PF13912 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr6D:-:464674283..464675383
Molecular Weight (calculated)
38194.5 Da
IEP (calculated)
8.276
GRAVY (calculated)
-0.319
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MQASAMELVL FREEGTVDDR LQQHGGAVVK RKRTKRPRHQ TPPVAAMACS SASSSESTTT EEEDMAHCLI LLAQGAAPPG VVVDSRPPPA TVPLEARQGT
101: PSLPPPGPLP APAVMSTTKT ERYTSRKYTE AATTADGVRA GFYVYECKTC NKCFPTFQAL GGHRASHKKP RLAGADDDTA ANATSVAIAK LSKPPSTKTA
201: TPPLVQIMTT ASPPPPPPPQ LDAGPDVTTV LSLNNGGSAV CNAVNTNRLR VHECSICGAE FASGQALGGH MRRHRPLHAP ADRTIATTAV TTIPASTTKK
301: DSTPAGINLE LDLNLPAPSD EECVSHPPPP PPPSAAPVVL GLGPFDSGKK RLMLTAASAA LVDCHY
101: PSLPPPGPLP APAVMSTTKT ERYTSRKYTE AATTADGVRA GFYVYECKTC NKCFPTFQAL GGHRASHKKP RLAGADDDTA ANATSVAIAK LSKPPSTKTA
201: TPPLVQIMTT ASPPPPPPPQ LDAGPDVTTV LSLNNGGSAV CNAVNTNRLR VHECSICGAE FASGQALGGH MRRHRPLHAP ADRTIATTAV TTIPASTTKK
301: DSTPAGINLE LDLNLPAPSD EECVSHPPPP PPPSAAPVVL GLGPFDSGKK RLMLTAASAA LVDCHY
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.