CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034116.1-P	Field mustard	plastid	100.0	90.65
CDY71034	Canola	nucleus	59.13	60.82
CDY08602	Canola	nucleus	79.76	59.47
CDY00945	Canola	nucleus	78.97	58.88
AT3G10470.1	Thale cress	nucleus	87.3	55.28
CDX70228	Canola	nucleus	65.87	51.23
CDY44852	Canola	nucleus	65.87	51.08
CDY11288	Canola	nucleus	66.67	51.06
CDY58436	Canola	nucleus	67.46	50.0
HORVU3Hr1G057300.1	Barley	nucleus	13.49	49.28
HORVU5Hr1G095320.1	Barley	nucleus	13.1	47.83
CDY61764	Canola	nucleus	63.1	46.76
HORVU2Hr1G122100.1	Barley	nucleus, plastid	13.89	45.45
HORVU4Hr1G082500.1	Barley	nucleus	12.3	44.93
HORVU1Hr1G012760.1	Barley	nucleus	12.3	44.93
KRH67769	Soybean	nucleus	34.52	40.28
HORVU5Hr1G095330.1	Barley	nucleus	12.3	40.26
HORVU5Hr1G095390.1	Barley	nucleus	12.3	40.26
HORVU1Hr1G020710.1	Barley	nucleus	11.9	38.96
CDY31725	Canola	nucleus	22.62	38.51
CDX77198	Canola	nucleus	22.62	38.51
CDY15775	Canola	nucleus	22.62	38.0
CDY04582	Canola	nucleus	22.62	38.0
CDY05027	Canola	nucleus	24.6	37.13
GSMUA_Achr1P03310_001	Banana	nucleus	24.21	36.53
CDY31593	Canola	nucleus	23.02	36.25
CDX71073	Canola	nucleus	22.62	36.08
CDX80226	Canola	nucleus	23.02	36.02
CDY11027	Canola	nucleus	32.94	35.93
CDX88724	Canola	nucleus	22.62	35.85
CDY09252	Canola	nucleus	22.22	35.67
CDY65692	Canola	nucleus	22.62	35.62
CDY70037	Canola	nucleus	35.32	35.32
CDY52747	Canola	nucleus	23.41	35.12
CDX76199	Canola	nucleus	24.21	35.06
CDY30501	Canola	nucleus	34.52	34.8
CDY30857	Canola	nucleus	23.02	34.73
CDY07578	Canola	nucleus	23.02	34.52
CDX93380	Canola	nucleus	24.21	34.08
CDX71375	Canola	nucleus	34.13	33.73
CDY04544	Canola	nucleus	34.13	33.59
CDX91362	Canola	nucleus	23.81	33.33
CDY18446	Canola	nucleus	23.81	33.33
VIT_08s0007g04770.t01	Wine grape	nucleus	36.51	33.33
CDX74961	Canola	nucleus	23.81	33.33
CDX89591	Canola	nucleus	27.38	33.17
CDX80870	Canola	nucleus	32.94	32.68
CDY04886	Canola	nucleus	34.52	32.46
CDY65670	Canola	nucleus	23.02	32.4
CDY11255	Canola	nucleus	32.54	32.28
CDY07790	Canola	nucleus	23.02	32.04
CDX70302	Canola	nucleus	32.94	31.32
CDY10376	Canola	nucleus	32.94	31.32
Zm00001d036330_P001	Maize	nucleus	30.56	31.3
PGSC0003DMT400009871	Potato	nucleus	36.9	31.21
CDY30924	Canola	nucleus	21.03	31.18
CDY44371	Canola	nucleus	32.94	30.97
CDX68366	Canola	nucleus	21.43	30.51
Solyc09g008440.1.1	Tomato	nucleus	36.51	29.68
KXG20985	Sorghum	nucleus, plastid	31.75	29.09
KRH19960	Soybean	nucleus	32.94	28.82
KRH32562	Soybean	nucleus	33.73	28.52
CDY42128	Canola	nucleus	25.0	28.25
CDX99130	Canola	nucleus	21.43	28.12
CDY58688	Canola	nucleus	9.92	28.09
CDY30925	Canola	nucleus	18.65	27.81
Os04t0162500-01	Rice	vacuole	31.35	27.34
CDX86044	Canola	nucleus	21.03	25.98
Os02t0823900-00	Rice	cytosol, nucleus, peroxisome	34.13	25.0
Zm00001d051865_P001	Maize	nucleus	32.54	24.85
TraesCS6B01G448900.1	Wheat	nucleus	34.52	23.84
KRG96047	Soybean	mitochondrion	34.13	23.82
HORVU6Hr1G092750.1	Barley	nucleus	34.13	23.82
TraesCS6A01G404600.1	Wheat	nucleus	34.52	23.71
TraesCS6D01G387900.1	Wheat	nucleus	34.13	23.5
TraesCS2A01G002400.1	Wheat	nucleus	30.95	22.81
EES07783	Sorghum	nucleus	34.52	22.25
Zm00001d004439_P001	Maize	nucleus	31.35	22.01
TraesCS2B01G020300.1	Wheat	nucleus	31.75	21.92
Zm00001d024866_P001	Maize	nucleus	31.35	21.58
EES10410	Sorghum	nucleus	32.14	20.2

Protein Annotations

EnsemblPlants:CDY41350	EnsemblPlantsGene:GSBRNA2T00072910001	Gene3D:3.30.160.60	GO:A0A078HRV1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF325
PFAM:PF13912	PFscan:PS50157	ProteinID:CDY41350	ProteinID:CDY41350.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0004EEEB8D	UniProt:A0A078HRV1	MapMan:15.5.15	:

Description

BnaA01g31690DBnaA01g31690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRV1]

Coordinates

chrLK032495:+:227175..228011

Molecular Weight (calculated)

26927.6 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.498

Length

252 amino acids

Sequence
(BLAST)

001: MANCLILLAQ GHSLPHQQPQ TRQLMVSYQE SGNNNNNAYR SSSRRFLETS SSNGTTTSGG RAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKAAPGLHD
101: LKKSLVVHGK ANNNKVHECG ICGAEFTSGQ ALGGHMRRHR GAGVAATATP TATLALPASA ATANTVLSLS PMSFDQLSDG PVYPVQAPVK RARSAVVSLD
201: LDLNLPAPED ENRVNGLSVA SKQEHGHEQT QGREEQKSIV LSSAPTLVDC YY

Best Arabidopsis Sequence Match ( AT3G10470.1 )
(BLAST)

001: MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q7G8T1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.