Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04544 | Canola | nucleus | 96.08 | 95.7 |
| Bra011970.1-P | Field mustard | nucleus | 95.69 | 84.72 |
| CDY30501 | Canola | nucleus | 78.43 | 80.0 |
| CDY70037 | Canola | nucleus | 78.82 | 79.76 |
| AT2G28200.1 | Thale cress | nucleus | 78.82 | 70.28 |
| CDY30857 | Canola | nucleus | 26.67 | 40.72 |
| CDY31725 | Canola | nucleus | 23.14 | 39.86 |
| CDX77198 | Canola | nucleus | 23.14 | 39.86 |
| CDY11027 | Canola | nucleus | 35.69 | 39.39 |
| CDX76199 | Canola | nucleus | 26.67 | 39.08 |
| CDY15775 | Canola | nucleus | 22.75 | 38.67 |
| CDY04582 | Canola | nucleus | 22.75 | 38.67 |
| CDY52747 | Canola | nucleus | 25.1 | 38.1 |
| CDY07578 | Canola | nucleus | 25.1 | 38.1 |
| CDX91362 | Canola | nucleus | 26.67 | 37.78 |
| CDX74961 | Canola | nucleus | 26.67 | 37.78 |
| CDX93380 | Canola | nucleus | 26.27 | 37.43 |
| CDY65670 | Canola | nucleus | 25.88 | 36.87 |
| CDY18446 | Canola | nucleus | 25.88 | 36.67 |
| CDY07790 | Canola | nucleus | 25.88 | 36.46 |
| CDX70302 | Canola | nucleus | 37.25 | 35.85 |
| CDX80870 | Canola | nucleus | 35.69 | 35.83 |
| CDY10376 | Canola | nucleus | 36.47 | 35.09 |
| CDY11255 | Canola | nucleus | 34.9 | 35.04 |
| CDY31593 | Canola | nucleus | 21.57 | 34.38 |
| CDX80226 | Canola | nucleus | 21.57 | 34.16 |
| CDY41350 | Canola | nucleus, plastid | 33.73 | 34.13 |
| CDY71034 | Canola | nucleus | 32.55 | 33.88 |
| CDY09252 | Canola | nucleus | 20.78 | 33.76 |
| CDX71073 | Canola | nucleus | 20.78 | 33.54 |
| CDX88724 | Canola | nucleus | 20.78 | 33.33 |
| CDY04886 | Canola | nucleus | 34.9 | 33.21 |
| CDX70228 | Canola | nucleus | 41.96 | 33.02 |
| CDY44371 | Canola | nucleus | 34.51 | 32.84 |
| CDY11288 | Canola | nucleus | 42.35 | 32.83 |
| CDY44852 | Canola | nucleus | 41.57 | 32.62 |
| CDY65692 | Canola | nucleus | 20.39 | 32.5 |
| CDY58436 | Canola | nucleus | 42.35 | 31.76 |
| CDY08602 | Canola | nucleus | 41.96 | 31.66 |
| CDX68366 | Canola | nucleus | 21.96 | 31.64 |
| CDY00945 | Canola | nucleus | 41.18 | 31.07 |
| CDY61764 | Canola | nucleus | 40.78 | 30.59 |
| CDY30924 | Canola | nucleus | 20.0 | 30.0 |
| CDY58688 | Canola | nucleus | 10.2 | 29.21 |
| CDX99130 | Canola | nucleus | 21.18 | 28.12 |
| CDY30925 | Canola | nucleus | 18.04 | 27.22 |
| CDX86044 | Canola | nucleus | 21.18 | 26.47 |
| CDX89591 | Canola | nucleus | 21.18 | 25.96 |
| CDY42128 | Canola | nucleus | 20.78 | 23.77 |
| CDY05027 | Canola | nucleus | 13.33 | 20.36 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078C3F2 | EnsemblPlants:CDX71375 | ProteinID:CDX71375 | ProteinID:CDX71375.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00148177001 | InterPro:IPR013087 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0004EE97D4 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
BnaC04g16100D
Coordinates
chrLK031793:+:235505..236658
Molecular Weight (calculated)
28021.8 Da
IEP (calculated)
7.191
GRAVY (calculated)
-0.598
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGQDHEVGS DQTQIIKGKR TKRQRSSSST FLVAAAATTI TSTSSSADGE RTASDEYNSV VSSPVTTTDC TEEEEDMAIC LIMLARGAAP SPPLPDLKNS
101: TKTDKNLHLK TSFYVYECKT CNRTFPSFQA LGGHRASHKK PRASIDEKAK VPLTQLKSIH ECSICGSEFT SGQALGGHMR RHRTVTNVVS SPVSTAEVSR
201: NSTEEETENL SRSMEQRKYL PLDLNLPAPE DDLRESKFQR IVFSATTPAL IDCHY
101: TKTDKNLHLK TSFYVYECKT CNRTFPSFQA LGGHRASHKK PRASIDEKAK VPLTQLKSIH ECSICGSEFT SGQALGGHMR RHRTVTNVVS SPVSTAEVSR
201: NSTEEETENL SRSMEQRKYL PLDLNLPAPE DDLRESKFQR IVFSATTPAL IDCHY
001: MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTAATTVTS TSSSAGGSGG ERAVSDEYNS AVSSPVTTDC TQEEEDMAIC LIMLARGTVL PSPDLKNSRK
101: IHQKISSENS SFYVYECKTC NRTFSSFQAL GGHRASHKKP RTSTEEKTRL PLTQPKSSAS EEGQNSHFKV SGSALASQAS NIINKANKVH ECSICGSEFT
201: SGQALGGHMR RHRTAVTTIS PVAATAEVSR NSTEEEIEIN IGRSMEQQRK YLPLDLNLPA PEDDLRESKF QGIVFSATPA LIDCHY
101: IHQKISSENS SFYVYECKTC NRTFSSFQAL GGHRASHKKP RTSTEEKTRL PLTQPKSSAS EEGQNSHFKV SGSALASQAS NIINKANKVH ECSICGSEFT
201: SGQALGGHMR RHRTAVTTIS PVAATAEVSR NSTEEEIEIN IGRSMEQQRK YLPLDLNLPA PEDDLRESKF QGIVFSATPA LIDCHY
Arabidopsis Description
ZAT5Zinc finger protein ZAT5 [Source:UniProtKB/Swiss-Prot;Acc:Q681X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.