Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31593 | Canola | nucleus | 95.65 | 96.25 |
| CDX71073 | Canola | nucleus | 85.71 | 87.34 |
| CDX88724 | Canola | nucleus | 85.09 | 86.16 |
| AT5G59820.1 | Thale cress | nucleus | 85.09 | 84.57 |
| CDY09252 | Canola | nucleus | 81.37 | 83.44 |
| CDY65692 | Canola | nucleus | 82.61 | 83.12 |
| CDY30924 | Canola | nucleus | 63.35 | 60.0 |
| CDX68366 | Canola | nucleus | 59.63 | 54.24 |
| CDY58688 | Canola | nucleus | 29.19 | 52.81 |
| CDX99130 | Canola | nucleus | 61.49 | 51.56 |
| CDY30925 | Canola | nucleus | 54.04 | 51.48 |
| CDX86044 | Canola | nucleus | 61.49 | 48.53 |
| CDX77198 | Canola | nucleus | 39.75 | 43.24 |
| CDY31725 | Canola | nucleus | 39.75 | 43.24 |
| CDY15775 | Canola | nucleus | 39.75 | 42.67 |
| CDY04582 | Canola | nucleus | 39.75 | 42.67 |
| KRH29844 | Soybean | nucleus, plastid | 37.27 | 41.67 |
| Solyc06g075780.1.1 | Tomato | nucleus | 39.13 | 40.91 |
| PGSC0003DMT400040144 | Potato | nucleus | 41.61 | 40.61 |
| PGSC0003DMT400040143 | Potato | nucleus | 41.61 | 40.36 |
| KRH24840 | Soybean | nucleus | 38.51 | 39.74 |
| Solyc11g073060.1.1 | Tomato | nucleus | 37.27 | 38.96 |
| PGSC0003DMT400040141 | Potato | nucleus | 40.99 | 38.82 |
| PGSC0003DMT400040206 | Potato | nucleus | 40.99 | 38.6 |
| PGSC0003DMT400040142 | Potato | nucleus | 39.13 | 38.18 |
| KRH23029 | Soybean | nucleus | 40.37 | 38.01 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 38.51 | 37.8 |
| KRH10294 | Soybean | nucleus | 39.75 | 37.21 |
| PGSC0003DMT400040207 | Potato | nucleus | 37.89 | 37.2 |
| CDX93380 | Canola | nucleus | 39.75 | 35.75 |
| CDY18446 | Canola | nucleus | 39.75 | 35.56 |
| CDX91362 | Canola | nucleus | 39.75 | 35.56 |
| CDY07578 | Canola | nucleus | 35.4 | 33.93 |
| CDY52747 | Canola | nucleus | 35.4 | 33.93 |
| CDX74961 | Canola | nucleus | 37.89 | 33.89 |
| CDY65670 | Canola | nucleus | 36.65 | 32.96 |
| CDY30857 | Canola | nucleus | 34.16 | 32.93 |
| CDY07790 | Canola | nucleus | 36.65 | 32.6 |
| CDX76199 | Canola | nucleus | 34.16 | 31.61 |
| CDY11027 | Canola | nucleus | 35.4 | 24.68 |
| CDX80870 | Canola | nucleus | 37.27 | 23.62 |
| CDY11255 | Canola | nucleus | 36.65 | 23.23 |
| CDY41350 | Canola | nucleus, plastid | 36.02 | 23.02 |
| CDX70302 | Canola | nucleus | 36.02 | 21.89 |
| CDY10376 | Canola | nucleus | 36.02 | 21.89 |
| CDY04886 | Canola | nucleus | 36.02 | 21.64 |
| CDY71034 | Canola | nucleus | 32.92 | 21.63 |
| CDY30501 | Canola | nucleus | 33.54 | 21.6 |
| CDX71375 | Canola | nucleus | 34.16 | 21.57 |
| CDY04544 | Canola | nucleus | 34.16 | 21.48 |
| CDY70037 | Canola | nucleus | 33.54 | 21.43 |
| CDY44371 | Canola | nucleus | 35.4 | 21.27 |
| CDY11288 | Canola | nucleus | 36.65 | 17.93 |
| CDY58436 | Canola | nucleus | 36.65 | 17.35 |
| CDY08602 | Canola | nucleus | 36.02 | 17.16 |
| CDY00945 | Canola | nucleus | 36.02 | 17.16 |
| CDX70228 | Canola | nucleus | 34.16 | 16.98 |
| CDY44852 | Canola | nucleus | 34.16 | 16.92 |
| CDY61764 | Canola | nucleus | 34.78 | 16.47 |
| CDY05027 | Canola | nucleus | 14.29 | 13.77 |
| CDX89591 | Canola | nucleus | 17.39 | 13.46 |
| CDY42128 | Canola | nucleus | 15.53 | 11.21 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078CST3 | EnsemblPlants:CDX80226 | ProteinID:CDX80226 | ProteinID:CDX80226.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00133177001 | InterPro:IPR013087 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0004EB52DA | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : | : | : |
Description
BnaC09g35160D
Coordinates
chrLK031820:-:626672..627197
Molecular Weight (calculated)
17086.9 Da
IEP (calculated)
9.561
GRAVY (calculated)
-0.094
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAISEIKLT VETTAAANCL MLLSRVGQEN VDGGSAKRVF TCKTCLKEFH SFQALGGHRA SHKKPNNESL SGLIKKSKAA SSHPCPICGV EFPMGQALGG
101: HMRRHRNESG GAGALVTREL LSEAALTTLK KSSSGRLACL DLSLGMVENL NLKLELGRPV C
101: HMRRHRNESG GAGALVTREL LSEAALTTLK KSSSGRLACL DLSLGMVENL NLKLELGRPV C
001: MVAESDNRDL TVDTAASCLM LLSGIGEHDG RKKRVFRCKT CERDFDSFQA LGGHRASHSK LTNSDDKSLP GSPKKKPKTT TTTTAHTCPI CGLEFPMGQA
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LX86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.