Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04390.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11288 | Canola | nucleus | 94.12 | 97.26 |
| Bra005803.1-P | Field mustard | nucleus | 97.06 | 91.92 |
| CDY71034 | Canola | nucleus | 57.35 | 79.59 |
| CDY44852 | Canola | nucleus | 75.59 | 79.08 |
| CDX70228 | Canola | nucleus | 75.29 | 79.01 |
| CDY61764 | Canola | nucleus | 77.06 | 77.06 |
| AT5G04390.1 | Thale cress | nucleus | 78.82 | 74.03 |
| CDX89591 | Canola | nucleus | 42.35 | 69.23 |
| CDY41350 | Canola | nucleus, plastid | 50.0 | 67.46 |
| CDY08602 | Canola | nucleus | 65.29 | 65.68 |
| CDY00945 | Canola | nucleus | 65.29 | 65.68 |
| CDY42128 | Canola | nucleus | 42.06 | 64.13 |
| CDY05027 | Canola | nucleus | 25.0 | 50.9 |
| CDY11027 | Canola | nucleus | 30.88 | 45.45 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 9.12 | 44.93 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 9.12 | 44.93 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 8.82 | 43.48 |
| CDY04544 | Canola | nucleus | 32.35 | 42.97 |
| CDY70037 | Canola | nucleus | 31.76 | 42.86 |
| CDY30501 | Canola | nucleus | 31.18 | 42.4 |
| CDX71375 | Canola | nucleus | 31.76 | 42.35 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 8.53 | 42.03 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 33.53 | 41.3 |
| KRH67769 | Soybean | nucleus | 26.18 | 41.2 |
| CDY11255 | Canola | nucleus | 30.59 | 40.94 |
| CDX80870 | Canola | nucleus | 30.29 | 40.55 |
| CDY04886 | Canola | nucleus | 31.76 | 40.3 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 9.12 | 40.26 |
| CDY04582 | Canola | nucleus | 17.65 | 40.0 |
| CDY15775 | Canola | nucleus | 17.65 | 40.0 |
| CDY31725 | Canola | nucleus | 17.35 | 39.86 |
| CDX77198 | Canola | nucleus | 17.35 | 39.86 |
| CDY10376 | Canola | nucleus | 30.88 | 39.62 |
| CDX70302 | Canola | nucleus | 30.88 | 39.62 |
| CDY44371 | Canola | nucleus | 31.18 | 39.55 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 8.82 | 38.96 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 19.12 | 38.92 |
| PGSC0003DMT400009871 | Potato | nucleus | 33.24 | 37.92 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 8.53 | 37.66 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 8.53 | 37.66 |
| CDY65692 | Canola | nucleus | 17.35 | 36.88 |
| CDY31593 | Canola | nucleus | 17.35 | 36.88 |
| CDX93380 | Canola | nucleus | 19.41 | 36.87 |
| CDX71073 | Canola | nucleus | 17.06 | 36.71 |
| CDX80226 | Canola | nucleus | 17.35 | 36.65 |
| CDX88724 | Canola | nucleus | 17.06 | 36.48 |
| KRH19960 | Soybean | nucleus | 30.88 | 36.46 |
| CDY09252 | Canola | nucleus | 16.76 | 36.31 |
| CDX76199 | Canola | nucleus | 18.53 | 36.21 |
| Solyc09g008440.1.1 | Tomato | nucleus | 32.94 | 36.13 |
| CDX91362 | Canola | nucleus | 19.12 | 36.11 |
| CDX74961 | Canola | nucleus | 19.12 | 36.11 |
| CDY52747 | Canola | nucleus | 17.65 | 35.71 |
| CDY18446 | Canola | nucleus | 18.82 | 35.56 |
| KRH32562 | Soybean | nucleus | 30.88 | 35.23 |
| CDY07578 | Canola | nucleus | 17.35 | 35.12 |
| CDY30857 | Canola | nucleus | 17.06 | 34.73 |
| CDY65670 | Canola | nucleus | 17.94 | 34.08 |
| Zm00001d036330_P001 | Maize | nucleus | 24.41 | 33.74 |
| CDY07790 | Canola | nucleus | 17.94 | 33.7 |
| CDY30924 | Canola | nucleus | 16.47 | 32.94 |
| CDX68366 | Canola | nucleus | 17.06 | 32.77 |
| KXG20985 | Sorghum | nucleus, plastid | 26.18 | 32.36 |
| CDY58688 | Canola | nucleus | 8.24 | 31.46 |
| CDX99130 | Canola | nucleus | 17.35 | 30.73 |
| Zm00001d051865_P001 | Maize | nucleus | 29.71 | 30.61 |
| CDY30925 | Canola | nucleus | 15.0 | 30.18 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 30.29 | 29.94 |
| KRG96047 | Soybean | mitochondrion | 31.76 | 29.92 |
| Zm00001d004439_P001 | Maize | nucleus | 31.47 | 29.8 |
| Zm00001d024866_P001 | Maize | nucleus | 31.47 | 29.23 |
| CDX86044 | Canola | nucleus | 17.35 | 28.92 |
| Os04t0162500-01 | Rice | vacuole | 24.41 | 28.72 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 30.88 | 28.61 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 30.29 | 28.53 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 30.29 | 28.22 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 30.29 | 28.14 |
| EES10410 | Sorghum | nucleus | 32.06 | 27.18 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 27.06 | 26.9 |
| EES07783 | Sorghum | nucleus | 30.29 | 26.34 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 26.76 | 24.93 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078J3R4 | UniProt:A0A078J3R4 | EnsemblPlants:CDY58436 | ProteinID:CDY58436 |
| ProteinID:CDY58436.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00023613001 |
| InterPro:IPR013087 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF325 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE0265 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
BnaC03g71210DBnaC03g71210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3R4]
Coordinates
chrLK033668:+:26051..27139
Molecular Weight (calculated)
37303.5 Da
IEP (calculated)
6.585
GRAVY (calculated)
-0.654
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAFEEAIAA SKEQALILKG KRTKRQRPQS PIPFSVSPPI VEEEVSNVLD SKENDVANRK KDGVVTSSSS SASWSSNNNP TLKGEEDEED QDVANCLILL
101: SQGHSFPQHN QQLKIPHQEI NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF YSNLDLKKSI YENDAASLAN
201: NNKVHECGIC GAEFTSGQAL GGHMRRHRGA VVVAAAPAPI VTVAAAAANT ELSLSSMSYD QISDGQDHLV MPEAKKAKKM VVSLDLDLNL PAPEDENRVN
301: GLSLALKQKH EQEQEHQETK QKEEPVSLVL SAPTLVDCYY
101: SQGHSFPQHN QQLKIPHQEI NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF YSNLDLKKSI YENDAASLAN
201: NNKVHECGIC GAEFTSGQAL GGHMRRHRGA VVVAAAPAPI VTVAAAAANT ELSLSSMSYD QISDGQDHLV MPEAKKAKKM VVSLDLDLNL PAPEDENRVN
301: GLSLALKQKH EQEQEHQETK QKEEPVSLVL SAPTLVDCYY
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.