Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11255 | Canola | nucleus | 90.94 | 90.94 |
| Bra005766.1-P | Field mustard | nucleus | 92.13 | 84.78 |
| CDY11027 | Canola | nucleus | 76.77 | 84.42 |
| CDY10376 | Canola | nucleus | 81.1 | 77.74 |
| CDX70302 | Canola | nucleus | 80.31 | 76.98 |
| CDY04886 | Canola | nucleus | 78.35 | 74.25 |
| CDY44371 | Canola | nucleus | 76.77 | 72.76 |
| AT5G03510.1 | Thale cress | nucleus | 79.92 | 69.52 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 11.81 | 38.96 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 42.13 | 38.77 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 25.2 | 38.32 |
| CDY15775 | Canola | nucleus | 22.44 | 38.0 |
| CDY04582 | Canola | nucleus | 22.44 | 38.0 |
| CDY31593 | Canola | nucleus | 23.62 | 37.5 |
| KRH67769 | Soybean | nucleus | 31.89 | 37.5 |
| CDX71073 | Canola | nucleus | 23.23 | 37.34 |
| CDX80226 | Canola | nucleus | 23.62 | 37.27 |
| CDX77198 | Canola | nucleus | 21.65 | 37.16 |
| CDY31725 | Canola | nucleus | 21.65 | 37.16 |
| CDX88724 | Canola | nucleus | 23.23 | 37.11 |
| CDY09252 | Canola | nucleus | 22.83 | 36.94 |
| CDX91362 | Canola | nucleus | 25.98 | 36.67 |
| CDX74961 | Canola | nucleus | 25.98 | 36.67 |
| CDY30501 | Canola | nucleus | 35.83 | 36.4 |
| CDY70037 | Canola | nucleus | 35.83 | 36.11 |
| CDY30857 | Canola | nucleus | 23.62 | 35.93 |
| CDX93380 | Canola | nucleus | 25.2 | 35.75 |
| CDX71375 | Canola | nucleus | 35.83 | 35.69 |
| CDY65692 | Canola | nucleus | 22.44 | 35.62 |
| CDY18446 | Canola | nucleus | 25.2 | 35.56 |
| CDY04544 | Canola | nucleus | 35.83 | 35.55 |
| KRH19960 | Soybean | nucleus | 40.16 | 35.42 |
| CDX76199 | Canola | nucleus | 24.02 | 35.06 |
| KRH32562 | Soybean | nucleus | 40.16 | 34.23 |
| PGSC0003DMT400009871 | Potato | nucleus | 40.16 | 34.23 |
| CDY07578 | Canola | nucleus | 22.44 | 33.93 |
| CDY52747 | Canola | nucleus | 22.44 | 33.93 |
| CDY58688 | Canola | nucleus | 11.81 | 33.71 |
| CDY07790 | Canola | nucleus | 24.02 | 33.7 |
| CDY65670 | Canola | nucleus | 23.62 | 33.52 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 9.06 | 33.33 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 9.06 | 33.33 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 9.06 | 33.33 |
| CDY30924 | Canola | nucleus | 22.05 | 32.94 |
| CDY41350 | Canola | nucleus, plastid | 32.68 | 32.94 |
| Solyc09g008440.1.1 | Tomato | nucleus | 40.16 | 32.9 |
| CDY71034 | Canola | nucleus | 31.1 | 32.24 |
| CDX68366 | Canola | nucleus | 22.44 | 32.2 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 8.66 | 31.88 |
| CDY44852 | Canola | nucleus | 40.55 | 31.69 |
| CDX70228 | Canola | nucleus | 40.16 | 31.48 |
| Zm00001d036330_P001 | Maize | nucleus | 30.32 | 31.3 |
| CDY11288 | Canola | nucleus | 40.16 | 31.0 |
| CDY30925 | Canola | nucleus | 20.47 | 30.77 |
| KXG20985 | Sorghum | nucleus, plastid | 33.07 | 30.55 |
| CDY58436 | Canola | nucleus | 40.55 | 30.29 |
| CDY08602 | Canola | nucleus | 39.76 | 29.88 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 9.06 | 29.87 |
| CDY00945 | Canola | nucleus | 38.98 | 29.29 |
| Zm00001d004439_P001 | Maize | nucleus | 40.55 | 28.69 |
| CDX99130 | Canola | nucleus | 21.65 | 28.65 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 8.66 | 28.57 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 8.66 | 28.57 |
| CDY61764 | Canola | nucleus | 38.19 | 28.53 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 37.8 | 28.07 |
| Os04t0162500-01 | Rice | vacuole | 31.89 | 28.03 |
| Zm00001d051865_P001 | Maize | nucleus | 35.83 | 27.58 |
| CDX86044 | Canola | nucleus | 22.05 | 27.45 |
| CDX89591 | Canola | nucleus | 22.05 | 26.92 |
| Zm00001d024866_P001 | Maize | nucleus | 38.58 | 26.78 |
| KRG96047 | Soybean | mitochondrion | 37.8 | 26.59 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 35.43 | 26.16 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 37.4 | 26.03 |
| EES10410 | Sorghum | nucleus | 39.37 | 24.94 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 35.04 | 24.38 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 34.65 | 24.38 |
| CDY42128 | Canola | nucleus | 21.26 | 24.22 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 34.65 | 24.04 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 34.65 | 23.98 |
| EES07783 | Sorghum | nucleus | 35.83 | 23.27 |
| CDY05027 | Canola | nucleus | 14.57 | 22.16 |
Protein Annotations
| EnsemblPlants:CDX80870 | EnsemblPlantsGene:GSBRNA2T00134267001 | Gene3D:3.30.160.60 | GO:A0A078CVI9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDX80870 | ProteinID:CDX80870.1 | ScanProsite:PS00028 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE5DBA | MapMan:15.5.15 | : | : | : |
Description
BnaC03g01240D
Coordinates
chrLK031823:+:560418..561248
Molecular Weight (calculated)
27893.1 Da
IEP (calculated)
8.420
GRAVY (calculated)
-0.621
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVHEETRL VLLIKGKRTK RQRSASPHIK AEVMSSVCNE ERSLEAREEG AGEIEFRGAT DEDQDMANCL MLLSQGHKSN TSGDPLLTQK IGFLSNKKPV
101: ASLGLGINGV YQCKTCDKSF HSFQALGGHR TSHKKPKLGA IVLKCDEKKS ASDGSKKQEK THECSICKAE FSSGQALGGH MRRHRGLTLN ANANSTIRTA
201: TSSSHNQESI RENNFMELDL NLPAPEDEPK FVFASKDQII LFTAASNSLI DCHH
101: ASLGLGINGV YQCKTCDKSF HSFQALGGHR TSHKKPKLGA IVLKCDEKKS ASDGSKKQEK THECSICKAE FSSGQALGGH MRRHRGLTLN ANANSTIRTA
201: TSSSHNQESI RENNFMELDL NLPAPEDEPK FVFASKDQII LFTAASNSLI DCHH
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.