Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011931.1-P | Field mustard | cytosol | 99.33 | 99.33 |
| CDY15775 | Canola | nucleus | 98.0 | 98.0 |
| CDX77198 | Canola | nucleus | 90.67 | 91.89 |
| CDY31725 | Canola | nucleus | 90.67 | 91.89 |
| AT2G28710.1 | Thale cress | nucleus | 88.67 | 85.26 |
| CDY09252 | Canola | nucleus | 46.0 | 43.95 |
| CDY65692 | Canola | nucleus | 45.33 | 42.5 |
| CDX71073 | Canola | nucleus | 44.67 | 42.41 |
| CDX88724 | Canola | nucleus | 44.67 | 42.14 |
| CDY31593 | Canola | nucleus | 42.67 | 40.0 |
| CDX80226 | Canola | nucleus | 42.67 | 39.75 |
| PGSC0003DMT400077933 | Potato | nucleus | 40.67 | 38.85 |
| CDY30924 | Canola | nucleus | 42.67 | 37.65 |
| CDX93380 | Canola | nucleus | 44.67 | 37.43 |
| CDX91362 | Canola | nucleus | 44.67 | 37.22 |
| CDY18446 | Canola | nucleus | 44.0 | 36.67 |
| CDY30857 | Canola | nucleus | 40.67 | 36.53 |
| CDX74961 | Canola | nucleus | 43.33 | 36.11 |
| CDX68366 | Canola | nucleus | 42.0 | 35.59 |
| CDY65670 | Canola | nucleus | 42.0 | 35.2 |
| CDY52747 | Canola | nucleus | 39.33 | 35.12 |
| CDY07790 | Canola | nucleus | 42.0 | 34.81 |
| CDY07578 | Canola | nucleus | 38.67 | 34.52 |
| CDX99130 | Canola | nucleus | 43.33 | 33.85 |
| PGSC0003DMT400090011 | Potato | nucleus | 34.67 | 33.55 |
| CDX76199 | Canola | nucleus | 38.67 | 33.33 |
| CDY30925 | Canola | nucleus | 36.67 | 32.54 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 21.33 | 32.0 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 23.33 | 31.82 |
| Solyc03g093870.1.1 | Tomato | nucleus | 36.67 | 31.61 |
| CDY58688 | Canola | nucleus | 18.67 | 31.46 |
| CDX86044 | Canola | nucleus | 42.67 | 31.37 |
| PGSC0003DMT400021456 | Potato | nucleus | 38.0 | 29.69 |
| CDY11027 | Canola | nucleus | 37.33 | 24.24 |
| CDY30501 | Canola | nucleus | 39.33 | 23.6 |
| CDY70037 | Canola | nucleus | 39.33 | 23.41 |
| CDY71034 | Canola | nucleus | 37.33 | 22.86 |
| CDY44371 | Canola | nucleus | 40.67 | 22.76 |
| CDX71375 | Canola | nucleus | 38.67 | 22.75 |
| CDY04544 | Canola | nucleus | 38.67 | 22.66 |
| CDY41350 | Canola | nucleus, plastid | 38.0 | 22.62 |
| CDX80870 | Canola | nucleus | 38.0 | 22.44 |
| CDY11255 | Canola | nucleus | 38.0 | 22.44 |
| CDY04886 | Canola | nucleus | 40.0 | 22.39 |
| CDX70302 | Canola | nucleus | 38.67 | 21.89 |
| CDY10376 | Canola | nucleus | 38.67 | 21.89 |
| CDY11288 | Canola | nucleus | 40.0 | 18.24 |
| CDY58436 | Canola | nucleus | 40.0 | 17.65 |
| CDY61764 | Canola | nucleus | 39.33 | 17.35 |
| CDY44852 | Canola | nucleus | 37.33 | 17.23 |
| CDY08602 | Canola | nucleus | 38.67 | 17.16 |
| CDX70228 | Canola | nucleus | 36.67 | 16.98 |
| CDY00945 | Canola | nucleus | 38.0 | 16.86 |
| CDX89591 | Canola | nucleus | 21.33 | 15.38 |
| CDY05027 | Canola | nucleus | 16.67 | 14.97 |
| CDY42128 | Canola | nucleus | 20.0 | 13.45 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078EUE3 | EnsemblPlants:CDY04582 | ProteinID:CDY04582 | ProteinID:CDY04582.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00118779001 | InterPro:IPR013087 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0004EDF8C5 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : | : | : |
Description
BnaA07g14080D
Coordinates
chrLK031955:+:1038579..1039031
Molecular Weight (calculated)
16321.0 Da
IEP (calculated)
10.403
GRAVY (calculated)
-0.429
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEREMEII NKMASCLIFL SKAHQHDTKG RVFACKTCNK EFSSFQALGG HRASHRRSAA LEGHAPPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR
101: GGGSSRSLAP APVTMKKTGG GNAKRVLCLD LNLTPVENED LKLELGRLIL
101: GGGSSRSLAP APVTMKKTGG GNAKRVLCLD LNLTPVENED LKLELGRLIL
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.