Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039806.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY30857 | Canola | nucleus | 84.48 | 88.02 |
| CDY07578 | Canola | nucleus | 71.84 | 74.4 |
| CDY52747 | Canola | nucleus | 71.26 | 73.81 |
| AT3G53600.1 | Thale cress | nucleus | 73.56 | 73.14 |
| CDY07790 | Canola | nucleus | 50.57 | 48.62 |
| CDY65670 | Canola | nucleus | 50.0 | 48.6 |
| KRH67564 | Soybean | nucleus | 47.7 | 47.98 |
| KRG95848 | Soybean | nucleus | 47.13 | 47.95 |
| CDY18446 | Canola | nucleus | 48.85 | 47.22 |
| CDX91362 | Canola | nucleus | 48.85 | 47.22 |
| CDX74961 | Canola | nucleus | 48.85 | 47.22 |
| KRH67565 | Soybean | cytosol, nucleus, plastid | 43.1 | 47.17 |
| KRH19741 | Soybean | nucleus | 47.7 | 47.16 |
| KRH19739 | Soybean | cytosol, nucleus | 42.53 | 46.54 |
| CDX93380 | Canola | nucleus | 47.7 | 46.37 |
| KRH32333 | Soybean | nucleus | 43.1 | 45.73 |
| KRH32335 | Soybean | nucleus | 45.4 | 44.13 |
| KRH67566 | Soybean | nucleus | 39.66 | 43.67 |
| KRH19742 | Soybean | nucleus | 45.4 | 43.41 |
| KRG95850 | Soybean | nucleus | 38.51 | 43.23 |
| KRH32334 | Soybean | nucleus | 43.68 | 41.99 |
| CDY15775 | Canola | nucleus | 33.91 | 39.33 |
| CDY04582 | Canola | nucleus | 33.33 | 38.67 |
| CDY31725 | Canola | nucleus | 32.18 | 37.84 |
| CDX77198 | Canola | nucleus | 32.18 | 37.84 |
| CDX71073 | Canola | nucleus | 33.33 | 36.71 |
| CDX88724 | Canola | nucleus | 32.76 | 35.85 |
| CDY09252 | Canola | nucleus | 32.18 | 35.67 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 20.11 | 35.0 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 21.84 | 34.55 |
| CDY31593 | Canola | nucleus | 31.61 | 34.38 |
| CDX80226 | Canola | nucleus | 31.61 | 34.16 |
| CDY65692 | Canola | nucleus | 31.03 | 33.75 |
| CDY30924 | Canola | nucleus | 31.03 | 31.76 |
| CDX68366 | Canola | nucleus | 30.46 | 29.94 |
| CDY30925 | Canola | nucleus | 27.01 | 27.81 |
| CDY58688 | Canola | nucleus | 13.79 | 26.97 |
| CDX71375 | Canola | nucleus | 39.08 | 26.67 |
| CDX99130 | Canola | nucleus | 29.31 | 26.56 |
| CDY04544 | Canola | nucleus | 38.51 | 26.17 |
| CDY30501 | Canola | nucleus | 36.78 | 25.6 |
| CDX86044 | Canola | nucleus | 29.89 | 25.49 |
| CDY70037 | Canola | nucleus | 36.78 | 25.4 |
| CDY11027 | Canola | nucleus | 33.33 | 25.11 |
| CDY41350 | Canola | nucleus, plastid | 35.06 | 24.21 |
| CDX80870 | Canola | nucleus | 35.06 | 24.02 |
| CDY11255 | Canola | nucleus | 34.48 | 23.62 |
| CDX70302 | Canola | nucleus | 35.63 | 23.4 |
| CDY10376 | Canola | nucleus | 35.06 | 23.02 |
| CDY44371 | Canola | nucleus | 35.06 | 22.76 |
| CDY04886 | Canola | nucleus | 35.06 | 22.76 |
| CDY71034 | Canola | nucleus | 31.03 | 22.04 |
| CDY00945 | Canola | nucleus | 37.36 | 19.23 |
| CDY08602 | Canola | nucleus | 36.78 | 18.93 |
| CDY11288 | Canola | nucleus | 35.63 | 18.84 |
| CDY58436 | Canola | nucleus | 36.21 | 18.53 |
| CDX70228 | Canola | nucleus | 34.48 | 18.52 |
| CDY44852 | Canola | nucleus | 33.91 | 18.15 |
| CDY61764 | Canola | nucleus | 33.91 | 17.35 |
| CDY05027 | Canola | nucleus | 14.37 | 14.97 |
| CDX89591 | Canola | nucleus | 17.82 | 14.9 |
| CDY42128 | Canola | nucleus | 15.52 | 12.11 |
Protein Annotations
| EnsemblPlants:CDX76199 | EnsemblPlantsGene:GSBRNA2T00126504001 | Gene3D:3.30.160.60 | GO:A0A078CJH9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF198 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDX76199 | ProteinID:CDX76199.1 | ScanProsite:PS00028 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI000254527D | MapMan:15.5.15 | : | : | : |
Description
BnaA04g04630D
Coordinates
chrLK031806:-:1762690..1763214
Molecular Weight (calculated)
19865.8 Da
IEP (calculated)
9.853
GRAVY (calculated)
-0.663
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDRSDYED FITHIDMIKT LTMSSHSFVV KQIESTGSKI NGNRFECKTC NRKFDSFQAL GGHRASHKKP KLMSVEQEQA KHRNNENDVH KCSICSQMFG
101: TGQALGGHIR RHRASMINEQ SVISSKVYTS PVNDQCQSSK RVMRLDLNLT PLENDLLNIF AKNLAPHIDL KFVN
101: TGQALGGHIR RHRASMINEQ SVISSKVYTS PVNDQCQSSK RVMRLDLNLT PLENDLLNIF AKNLAPHIDL KFVN
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.