Factsheet for GSMUA_Achr10P03700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03210_001	Banana	nucleus	57.87	73.57
GSMUA_Achr5P29140_001	Banana	nucleus	66.85	68.39
GSMUA_Achr5P28550_001	Banana	nucleus	57.87	60.23
GSMUA_Achr11P...	Banana	nucleus	50.0	58.94
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	50.0	58.55
PGSC0003DMT400060523	Potato	mitochondrion	42.7	55.07
VIT_06s0004g04180.t01	Wine grape	nucleus	48.31	54.09
Solyc05g054650.1.1	Tomato	plastid	44.94	52.63
VIT_13s0019g00480.t01	Wine grape	nucleus	51.69	52.27
GSMUA_Achr8P02630_001	Banana	nucleus	29.21	52.0
GSMUA_Achr6P33180_001	Banana	nucleus	38.76	51.49
KRH01600	Soybean	cytosol, extracellular, nucleus	49.44	50.29
KRH70509	Soybean	nucleus	48.88	48.33
GSMUA_Achr6P34280_001	Banana	cytosol, mitochondrion, nucleus	29.78	48.18
Solyc05g054660.1.1	Tomato	nucleus, plastid	44.38	47.31
KRG90559	Soybean	nucleus	45.51	46.82
KRH36195	Soybean	extracellular	46.07	44.32
GSMUA_Achr1P06720_001	Banana	nucleus	35.96	42.38
GSMUA_Achr10P...	Banana	nucleus	37.08	40.49
GSMUA_Achr11P...	Banana	nucleus	31.46	39.72
GSMUA_Achr1P01260_001	Banana	mitochondrion, nucleus, peroxisome, plastid	30.9	35.71
PGSC0003DMT400060463	Potato	nucleus	41.01	35.1
GSMUA_Achr11P...	Banana	nucleus	37.08	34.2
GSMUA_Achr11P...	Banana	nucleus	35.96	32.32
GSMUA_AchrUn_...	Banana	nucleus	39.33	30.57
GSMUA_Achr1P03310_001	Banana	nucleus	28.65	30.54
GSMUA_Achr10P...	Banana	nucleus	30.34	28.72
GSMUA_Achr8P12900_001	Banana	nucleus	32.58	28.71

Protein Annotations

EnsemblPlants:GSMUA_Achr10P03700_001	EnsemblPlants:GSMUA_Achr10T03700_001	EnsemblPlantsGene:GSMUA_Achr10G03700_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF162
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000295E2ED	UniProt:M0RF47	MapMan:15.5.15	:	:	:

Description

ZOS3-09 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G03700_001]

Coordinates

chr10:-:12008751..12009479

Molecular Weight (calculated)

18646.4 Da

IEP (calculated)

9.092

GRAVY (calculated)

-0.483

Length

178 amino acids

Sequence
(BLAST)

001: MDVFKDTKRY RLGGGGVGGG GEQIDSVNMA NVLMLLSQGG GGSGGGAEKR DHSGRVFECK TCNRQFPSFQ ALGGHRASHK KPRLGGDGHG QAQGGAAKPR
101: VHECSICGLE FAIGQALGGH MRRHRTTAEG FGHGLTEKPP GDRRGTLLDL NLPPLETDLK LGLGLEIVDK IPMVGCGH

Best Arabidopsis Sequence Match ( AT2G28710.1 )
(BLAST)

001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF

Arabidopsis Description

At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.