Factsheet for GSMUA_Achr11P02250_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	80.31	78.28
GSMUA_Achr8P12900_001	Banana	nucleus	67.88	64.85
GSMUA_Achr1P06720_001	Banana	nucleus	44.04	56.29
GSMUA_Achr10P...	Banana	nucleus	43.52	51.53
GSMUA_Achr1P01260_001	Banana	mitochondrion, nucleus, peroxisome, plastid	36.27	45.45
GSMUA_Achr9P03210_001	Banana	nucleus	30.57	42.14
GSMUA_Achr11P...	Banana	nucleus	29.02	39.72
GSMUA_Achr1P03310_001	Banana	nucleus	34.2	39.52
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	29.53	37.5
GSMUA_Achr10P...	Banana	nucleus	34.2	37.08
GSMUA_AchrUn_...	Banana	nucleus	43.52	36.68
GSMUA_Achr11P...	Banana	nucleus	28.5	36.42
GSMUA_Achr5P29140_001	Banana	nucleus	32.64	36.21
GSMUA_Achr6P33180_001	Banana	nucleus	24.87	35.82
GSMUA_Achr6P34280_001	Banana	cytosol, mitochondrion, nucleus	20.21	35.45
GSMUA_Achr5P28550_001	Banana	nucleus	30.57	34.5
GSMUA_Achr8P02630_001	Banana	nucleus	17.1	33.0
GSMUA_Achr10P...	Banana	nucleus	26.42	27.13

Protein Annotations

EnsemblPlants:GSMUA_Achr11P02250_001	EnsemblPlants:GSMUA_Achr11T02250_001	EnsemblPlantsGene:GSMUA_Achr11G02250_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF329
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000294F32E	UniProt:M0RNQ5	MapMan:15.5.15	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G02250_001]

Coordinates

chr11:+:1547957..1548757

Molecular Weight (calculated)

20625.5 Da

IEP (calculated)

8.689

GRAVY (calculated)

-0.488

Length

193 amino acids

Sequence
(BLAST)

001: MANCLILLAQ GRAFDTGPKP EEHKDEAGGG GGGSEKFTSR KLIEAATTTN GKAGIYVYEC KTCSKCFPSF QALGGHRTSH KKHKLAATTT TAEEKKLETP
101: TKPKVHECSI CGSEFSSGQA LGGHMRRHRP LAIADSQEAK KDKSFLSLDL NLPAPADDEL QRPPSPTLAL ATKRPFIFSA SASAPALVVD CHY

Best Arabidopsis Sequence Match ( AT5G04390.1 )
(BLAST)

001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.