Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P06720_001 | Banana | nucleus | 42.21 | 43.05 |
| GSMUA_Achr10P... | Banana | nucleus | 43.51 | 41.1 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 42.21 | 38.92 |
| GSMUA_Achr9P03210_001 | Banana | nucleus | 33.12 | 36.43 |
| GSMUA_Achr11P... | Banana | nucleus | 46.75 | 36.36 |
| GSMUA_Achr11P... | Banana | nucleus | 45.45 | 36.27 |
| GSMUA_Achr6P33180_001 | Banana | nucleus | 29.87 | 34.33 |
| GSMUA_Achr11P... | Banana | nucleus | 31.17 | 34.04 |
| GSMUA_Achr11P... | Banana | nucleus | 31.82 | 32.45 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus | 31.82 | 32.24 |
| GSMUA_Achr5P28550_001 | Banana | nucleus | 35.06 | 31.58 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 30.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.45 | 30.57 |
| GSMUA_Achr5P29140_001 | Banana | nucleus | 34.42 | 30.46 |
| GSMUA_Achr8P12900_001 | Banana | nucleus | 39.61 | 30.2 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 19.48 | 27.27 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 17.53 | 27.0 |
| GSMUA_Achr10P... | Banana | nucleus | 29.87 | 24.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P01260_001 | EnsemblPlants:GSMUA_Achr1T01260_001 | EnsemblPlantsGene:GSMUA_Achr1G01260_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF329 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI000294E218 | UniProt:M0RW34 | MapMan:15.5.15 | : | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G01260_001]
Coordinates
chr1:-:958306..958842
Molecular Weight (calculated)
16508.6 Da
IEP (calculated)
8.392
GRAVY (calculated)
-0.377
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MANCLILLAR GRASDAGLKA EGLGGEDGGA GRNLYECRTC SKSFPSFQAL GGHRASHKKP NMNSFPSIKP KIHECSICGL EFNSGQALGG HMRRHRPLTT
101: STIQGAANKE RAFLSLDLNL PAPADDEQDE LRRPTSPAFT FVLAAPSALV DCHY
101: STIQGAANKE RAFLSLDLNL PAPADDEQDE LRRPTSPAFT FVLAAPSALV DCHY
001: MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTAATTVTS TSSSAGGSGG ERAVSDEYNS AVSSPVTTDC TQEEEDMAIC LIMLARGTVL PSPDLKNSRK
101: IHQKISSENS SFYVYECKTC NRTFSSFQAL GGHRASHKKP RTSTEEKTRL PLTQPKSSAS EEGQNSHFKV SGSALASQAS NIINKANKVH ECSICGSEFT
201: SGQALGGHMR RHRTAVTTIS PVAATAEVSR NSTEEEIEIN IGRSMEQQRK YLPLDLNLPA PEDDLRESKF QGIVFSATPA LIDCHY
101: IHQKISSENS SFYVYECKTC NRTFSSFQAL GGHRASHKKP RTSTEEKTRL PLTQPKSSAS EEGQNSHFKV SGSALASQAS NIINKANKVH ECSICGSEFT
201: SGQALGGHMR RHRTAVTTIS PVAATAEVSR NSTEEEIEIN IGRSMEQQRK YLPLDLNLPA PEDDLRESKF QGIVFSATPA LIDCHY
Arabidopsis Description
ZAT5Zinc finger protein ZAT5 [Source:UniProtKB/Swiss-Prot;Acc:Q681X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.