Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G112940.1 | Barley | nucleus | 57.14 | 37.96 |
| Zm00001d012967_P001 | Maize | plastid | 47.25 | 34.13 |
| Zm00001d034642_P001 | Maize | nucleus, plastid | 52.75 | 33.1 |
| HORVU5Hr1G113130.1 | Barley | nucleus | 50.55 | 32.86 |
| HORVU5Hr1G045780.1 | Barley | nucleus | 50.55 | 32.86 |
| HORVU5Hr1G113070.1 | Barley | nucleus | 49.45 | 32.14 |
| EER93193 | Sorghum | cytosol, nucleus, plastid | 50.55 | 30.87 |
| HORVU1Hr1G021410.1 | Barley | plastid | 51.65 | 30.32 |
| HORVU5Hr1G112930.1 | Barley | nucleus | 70.33 | 29.63 |
| HORVU5Hr1G112900.1 | Barley | nucleus | 45.05 | 22.4 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 16.48 | 21.74 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 16.48 | 21.74 |
| HORVU5Hr1G113090.1 | Barley | nucleus | 40.66 | 21.51 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 15.38 | 20.29 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 16.48 | 19.48 |
| HORVU5Hr1G112970.1 | Barley | nucleus | 40.66 | 19.47 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 14.29 | 18.84 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 15.38 | 18.18 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 15.38 | 18.18 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 15.38 | 18.18 |
| HORVU5Hr1G112870.1 | Barley | nucleus | 38.46 | 18.13 |
| HORVU5Hr1G045760.1 | Barley | nucleus | 40.66 | 16.09 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 24.18 | 15.94 |
| Solyc05g054650.1.1 | Tomato | plastid | 24.18 | 14.47 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 25.27 | 14.47 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 24.18 | 13.17 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 25.27 | 13.07 |
| HORVU1Hr1G006920.1 | Barley | nucleus | 25.27 | 12.64 |
| HORVU5Hr1G112820.1 | Barley | nucleus | 21.98 | 12.58 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 24.18 | 12.57 |
| HORVU4Hr1G058690.1 | Barley | nucleus | 25.27 | 12.23 |
| KRH70509 | Soybean | nucleus | 24.18 | 12.22 |
| KRG90559 | Soybean | nucleus | 23.08 | 12.14 |
| HORVU1Hr1G006910.1 | Barley | nucleus | 25.27 | 11.98 |
| HORVU4Hr1G058720.1 | Barley | nucleus | 24.18 | 11.76 |
| KRH36195 | Soybean | extracellular | 23.08 | 11.35 |
| HORVU3Hr1G086840.1 | Barley | nucleus | 24.18 | 10.78 |
| HORVU3Hr1G086790.2 | Barley | nucleus | 23.08 | 10.61 |
| PGSC0003DMT400060463 | Potato | nucleus | 21.98 | 9.62 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 19.78 | 4.99 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G052990.1 | EnsemblPlantsGene:HORVU6Hr1G052990 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF169 | PFAM:PF13912 | ScanProsite:PS00028 | SEG:seg |
| UniParc:UPI000B47AF9B | UniProt:A0A287U6P8 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:328053015..328053424
Molecular Weight (calculated)
9887.8 Da
IEP (calculated)
10.065
GRAVY (calculated)
-0.459
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: RFLAAQQCKD QAEVPLSLSL TLSAMVDRIS KKQRRDADGE FVCKTCSRAF PSFHVLGGHG TSRLHGRHGL ALGLTAGSDE PAIKKTTDQK H
001: MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY
101: ADEEDQDMAN CLILLAQGHS LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY VYQCKTCDRT FPSFQALGGH
201: RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV
301: AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q7G8T1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.