Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G478300.1 | Wheat | nucleus | 90.68 | 88.48 |
| TraesCS5D01G491400.1 | Wheat | nucleus | 85.09 | 81.55 |
| TraesCS5D01G491200.1 | Wheat | nucleus | 80.75 | 79.75 |
| TraesCS5B01G490800.1 | Wheat | nucleus | 81.99 | 77.19 |
| TraesCS5B01G491200.1 | Wheat | nucleus | 86.96 | 76.92 |
| HORVU5Hr1G113090.1 | Barley | nucleus | 79.5 | 74.42 |
| TraesCS5B01G489800.1 | Wheat | nucleus | 73.91 | 68.0 |
| TraesCS5B01G490300.1 | Wheat | nucleus | 68.32 | 67.9 |
| HORVU5Hr1G112970.1 | Barley | nucleus | 79.5 | 67.37 |
| TraesCS5B01G490000.1 | Wheat | nucleus | 72.67 | 66.1 |
| TraesCS5B01G490100.1 | Wheat | nucleus | 72.67 | 66.1 |
| TraesCS5B01G490600.1 | Wheat | nucleus | 77.64 | 62.19 |
| EER93194 | Sorghum | nucleus, plastid | 68.32 | 60.11 |
| TraesCS5B01G490400.1 | Wheat | nucleus | 49.07 | 59.4 |
| Zm00001d034641_P001 | Maize | nucleus | 63.35 | 58.96 |
| Os03t0820300-01 | Rice | nucleus | 62.11 | 58.82 |
| TraesCS5B01G490500.1 | Wheat | nucleus | 47.2 | 56.72 |
| TraesCS5B01G490700.1 | Wheat | nucleus | 47.83 | 56.62 |
| Zm00001d012968_P001 | Maize | nucleus | 61.49 | 56.57 |
| TraesCS5B01G490900.1 | Wheat | nucleus | 47.83 | 56.2 |
| TraesCS5B01G491300.1 | Wheat | nucleus | 47.2 | 55.88 |
| HORVU5Hr1G045760.1 | Barley | nucleus | 79.5 | 55.65 |
| TraesCS5B01G491100.1 | Wheat | nucleus | 45.34 | 53.68 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 29.19 | 34.06 |
| Solyc05g054650.1.1 | Tomato | plastid | 29.81 | 31.58 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 31.06 | 31.45 |
| KRG90559 | Soybean | nucleus | 32.92 | 30.64 |
| TraesCS5B01G489400.1 | Wheat | nucleus | 29.81 | 30.0 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 31.68 | 29.14 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 31.68 | 28.98 |
| TraesCS4B01G203400.1 | Wheat | nucleus | 32.3 | 28.42 |
| KRH70509 | Soybean | nucleus | 31.68 | 28.33 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 29.19 | 28.14 |
| KRH36195 | Soybean | extracellular | 31.68 | 27.57 |
| TraesCS1B01G053000.1 | Wheat | nucleus | 31.68 | 26.84 |
| TraesCS1B01G053200.1 | Wheat | nucleus | 31.06 | 26.45 |
| TraesCS1B01G053100.1 | Wheat | nucleus | 30.43 | 25.93 |
| TraesCS1B01G295400.1 | Wheat | nucleus | 37.27 | 25.32 |
| TraesCS3B01G389400.1 | Wheat | nucleus | 30.43 | 25.0 |
| TraesCS4B01G143400.1 | Wheat | nucleus | 24.84 | 24.69 |
| TraesCS3B01G389000.1 | Wheat | nucleus | 31.06 | 24.04 |
| PGSC0003DMT400060463 | Potato | nucleus | 27.33 | 21.15 |
| TraesCS3B01G389100.1 | Wheat | nucleus | 31.06 | 19.46 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 35.4 | 15.62 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 31.06 | 13.7 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G491000.1 | EnsemblPlantsGene:TraesCS5B01G491000 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF166 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5B:+:659704312..659705089
Molecular Weight (calculated)
17352.7 Da
IEP (calculated)
10.464
GRAVY (calculated)
-0.474
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRAREQEVL SLALSLSTDS TSSSADSAGA PARKRARRGR VVATSGEGEF VCKTCGRAFA SFQALGGHRT SHLRGRHGLE LGVGIARAIK ERQKQEDKQQ
101: HDCHICGLGF GTGQALGGHM RRHREEMALS GAIDRWVALS NQEAGHQAAA DRPPVLLELF V
101: HDCHICGLGF GTGQALGGHM RRHREEMALS GAIDRWVALS NQEAGHQAAA DRPPVLLELF V
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.