CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73777	nucleus
CDX77958	nucleus
CDX88593	nucleus
CDX89358	nucleus
CDX90680	nucleus
CDX94365	nucleus
CDY20709	nucleus
CDY24779	nucleus
CDY28986	nucleus
CDY32755	nucleus
CDY32891	nucleus
CDY42752	nucleus
CDY42753	nucleus
CDY53079	nucleus
CDY65439	nucleus
CDY67546	nucleus
CDY67979	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	CDX73777	AT3G50870.1	23335616
AT3G50870.1	CDX77958	AT3G50870.1	23335616
AT3G50870.1	CDX90680	AT3G50870.1	23335616
AT3G50870.1	CDY28986	AT3G50870.1	23335616
AT3G50870.1	CDX73777	AT3G50870.1	23335616
AT3G50870.1	CDX77958	AT3G50870.1	23335616
AT3G50870.1	CDX90680	AT3G50870.1	23335616
AT3G50870.1	CDY28986	AT3G50870.1	23335616
AT3G50870.1	CDX89358	AT4G26150.1	23335616
AT3G50870.1	CDX94365	AT4G26150.1	23335616
AT3G50870.1	CDY42752	AT4G26150.1	23335616
AT3G50870.1	CDY42753	AT4G26150.1	23335616
AT3G50870.1	CDY67546	AT4G26150.1	23335616
AT3G50870.1	CDX89358	AT4G26150.1	23335616
AT3G50870.1	CDX94365	AT4G26150.1	23335616
AT3G50870.1	CDY42752	AT4G26150.1	23335616
AT3G50870.1	CDY42753	AT4G26150.1	23335616
AT3G50870.1	CDY67546	AT4G26150.1	23335616
AT3G50870.1	CDY24779	AT4G36620.1	23335616
AT3G50870.1	CDY53079	AT4G36620.1	23335616
AT3G50870.1	CDY24779	AT4G36620.1	23335616
AT3G50870.1	CDY53079	AT4G36620.1	23335616
AT3G50870.1	CDX88593	AT5G56860.1	23335616
AT3G50870.1	CDY20709	AT5G56860.1	23335616
AT3G50870.1	CDY32755	AT5G56860.1	23335616
AT3G50870.1	CDY32891	AT5G56860.1	23335616
AT3G50870.1	CDY65439	AT5G56860.1	23335616
AT3G50870.1	CDY67979	AT5G56860.1	23335616
AT3G50870.1	CDX88593	AT5G56860.1	23335616
AT3G50870.1	CDY20709	AT5G56860.1	23335616
AT3G50870.1	CDY32755	AT5G56860.1	23335616
AT3G50870.1	CDY32891	AT5G56860.1	23335616
AT3G50870.1	CDY65439	AT5G56860.1	23335616
AT3G50870.1	CDY67979	AT5G56860.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012883.1-P	Field mustard	nucleus	100.0	100.0
CDY28986	Canola	cytosol	94.96	96.35
CDX77958	Canola	nucleus	75.18	78.57
CDX73777	Canola	nucleus	79.86	76.55
AT3G50870.1	Thale cress	cytosol	80.58	75.93
CDY24779	Canola	nucleus	41.01	53.52
CDX72587	Canola	cytosol	43.17	52.86
CDY53079	Canola	cytosol	38.49	51.69
CDY70754	Canola	nucleus	41.37	51.57
CDY69687	Canola	nucleus	34.89	51.32
CDY68627	Canola	nucleus	40.65	50.9
CDX69237	Canola	nucleus	40.29	50.22
Solyc02g085190.1.1	Tomato	plastid	42.45	46.83
CDY72649	Canola	nucleus	32.73	45.5
PGSC0003DMT400009031	Potato	plastid	39.93	44.94
CDY13040	Canola	cytosol	32.01	44.72
CDY60289	Canola	nucleus	32.01	44.06
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	37.77	43.75
CDY45238	Canola	nucleus	36.33	42.8
CDY51221	Canola	nucleus	30.58	42.29
CDY30768	Canola	nucleus	34.53	42.11
PGSC0003DMT400040074	Potato	nucleus	34.17	38.31
Solyc02g062760.2.1	Tomato	nucleus	34.17	37.4
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	30.58	36.64
KRH43324	Soybean	nucleus	17.63	36.03
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	25.9	34.12
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	24.82	33.99
Zm00001d043969_P001	Maize	endoplasmic reticulum	28.06	33.48
KXG33047	Sorghum	extracellular	28.78	32.79
GSMUA_Achr7P25620_001	Banana	nucleus	27.34	32.62
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	26.26	32.59
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	27.7	31.82
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	26.26	31.74
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	26.26	31.47
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	26.26	31.2
EES19963	Sorghum	mitochondrion, nucleus, vacuole	25.54	31.0
Os05t0567900-00	Rice	cytosol, extracellular, plastid	27.34	30.4
CDY25008	Canola	nucleus	10.79	30.0
CDX87024	Canola	nucleus	10.79	29.13
CDX86241	Canola	nucleus	12.23	26.77
CDY68751	Canola	cytosol, mitochondrion	9.71	26.73
CDX85400	Canola	nucleus	11.87	25.98
CDY05639	Canola	nucleus	12.23	25.95
CDY33918	Canola	nucleus	12.23	24.11
CDY34933	Canola	nucleus	11.87	23.57
CDX95897	Canola	nucleus	12.23	20.73
CDX92103	Canola	nucleus	12.23	20.48
CDY34429	Canola	cytosol	11.15	20.26
CDX90545	Canola	nucleus	10.43	19.73
CDX82388	Canola	nucleus	11.15	17.82
CDX80603	Canola	nucleus	9.35	17.69
CDY34981	Canola	nucleus	10.79	17.54
CDY09717	Canola	nucleus	11.15	17.51
CDX75893	Canola	nucleus	11.51	17.49
CDY32214	Canola	nucleus	11.15	17.32
CDY52723	Canola	nucleus	11.15	17.22
CDX88593	Canola	nucleus	19.42	15.21
CDY65439	Canola	nucleus	19.42	14.06
CDY20709	Canola	nucleus	19.78	13.96
CDY67979	Canola	nucleus	19.42	13.78
CDY32891	Canola	nucleus	18.7	13.4
CDY32755	Canola	nucleus	18.35	13.18
CDX94365	Canola	nucleus	16.91	13.06
CDY42753	Canola	nucleus	17.27	12.97
CDY42752	Canola	nucleus	17.27	12.97
CDX89358	Canola	nucleus	16.55	12.78
CDY67546	Canola	nucleus	16.55	12.23

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078DNB9	EnsemblPlants:CDX90680	ProteinID:CDX90680	ProteinID:CDX90680.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00151338001	InterPro:IPR000679	InterPro:IPR013088	PFAM:PF00320
ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716
UniParc:UPI0002540662	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

BnaA03g41010D

Coordinates

chrLK031863:-:1469432..1470614

Molecular Weight (calculated)

30415.5 Da

IEP (calculated)

7.657

GRAVY (calculated)

-0.871

Length

278 amino acids

Sequence
(BLAST)

001: MMHTPYNTST QGQYCHYCAM FHHHSQSCCY NNNNNSNAGV YEQNGEDYYS SSVVDCTLSL GTPSTRLCEE DEKRKRTTSY GPSSCISNFL DLIHTKNNNS
101: NTKPSFDFPS FSTGNPIKPT RGCPSGNGGG DSLLARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRTTTASGN AVVGASPIAG DPYGHHNASY
201: NNYNITTSHN NSGTSWAQHT TQRAPCNYPA NEIRFMDDYS STGADNNGDS DGSHGGVPFL SWRLNVADRA SLVHDFTR

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.