Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68751 | Canola | cytosol, mitochondrion | 100.0 | 78.22 |
| Bra036600.1-P | Field mustard | nucleus | 81.01 | 62.14 |
| AT5G26930.1 | Thale cress | cytosol | 77.22 | 50.83 |
| CDX80603 | Canola | nucleus | 93.67 | 50.34 |
| KXG32453 | Sorghum | nucleus | 41.77 | 26.4 |
| Bra037421.1-P | Field mustard | nucleus | 41.77 | 25.98 |
| Bra040288.1-P | Field mustard | nucleus | 45.57 | 25.9 |
| Bra020650.1-P | Field mustard | nucleus | 44.3 | 25.0 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 39.24 | 25.0 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 37.97 | 23.81 |
| Zm00001d037605_P001 | Maize | nucleus | 43.04 | 23.78 |
| Zm00001d009193_P001 | Maize | plastid | 41.77 | 23.74 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 43.04 | 23.29 |
| Os01t0343300-01 | Rice | nucleus | 37.97 | 22.9 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 43.04 | 22.82 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 41.77 | 22.6 |
| Os01t0976800-01 | Rice | nucleus | 40.51 | 22.54 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 40.51 | 22.54 |
| Solyc01g100220.2.1 | Tomato | nucleus | 41.77 | 22.15 |
| PGSC0003DMT400063771 | Potato | nucleus | 41.77 | 21.85 |
| Zm00001d040775_P001 | Maize | nucleus | 40.51 | 21.77 |
| KXG21349 | Sorghum | cytosol | 41.77 | 21.15 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 41.77 | 20.75 |
| Bra022184.1-P | Field mustard | nucleus | 43.04 | 20.48 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 36.71 | 20.42 |
| EER93149 | Sorghum | nucleus | 40.51 | 20.38 |
| Zm00001d034751_P001 | Maize | nucleus | 41.77 | 20.25 |
| Bra021209.1-P | Field mustard | nucleus | 43.04 | 19.88 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 40.51 | 19.75 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 34.18 | 19.71 |
| Bra033533.1-P | Field mustard | nucleus | 44.3 | 19.55 |
| Bra012742.1-P | Field mustard | nucleus | 40.51 | 19.16 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 39.24 | 19.14 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 40.51 | 19.05 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 45.57 | 18.65 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 39.24 | 18.56 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 40.51 | 17.88 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 40.51 | 17.78 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 39.24 | 17.13 |
| Zm00001d011771_P001 | Maize | nucleus | 41.77 | 16.92 |
| EES04307 | Sorghum | nucleus | 44.3 | 16.13 |
| HORVU1Hr1G022710.3 | Barley | plastid | 41.77 | 15.28 |
| Bra017766.1-P | Field mustard | nucleus | 34.18 | 14.29 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 22.78 | 13.43 |
| Bra001644.1-P | Field mustard | nucleus | 22.78 | 12.33 |
| Bra012080.1-P | Field mustard | nucleus | 36.71 | 12.29 |
| Bra037221.1-P | Field mustard | nucleus | 36.71 | 12.24 |
| Bra011695.1-P | Field mustard | nucleus | 34.18 | 12.11 |
| Bra010563.1-P | Field mustard | cytosol | 31.65 | 11.74 |
| Bra035633.1-P | Field mustard | nucleus | 41.77 | 10.96 |
| Bra012883.1-P | Field mustard | nucleus | 34.18 | 9.71 |
| Bra036854.1-P | Field mustard | nucleus | 34.18 | 9.34 |
| Bra026461.1-P | Field mustard | nucleus | 41.77 | 9.17 |
| Bra002788.1-P | Field mustard | nucleus | 43.04 | 8.79 |
| Bra006851.1-P | Field mustard | nucleus, plastid | 41.77 | 8.59 |
| Bra019118.1-P | Field mustard | nucleus | 41.77 | 8.51 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EnsemblPlantsGene:Bra009926 | EnsemblPlants:Bra009926.1 | EnsemblPlants:Bra009926.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR013088 | UniProt:M4D0C8 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000253F438 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : | : |
Description
AT5G26930 (E=6e-027) | zinc finger (GATA type) family protein
Coordinates
chrA06:+:18118598..18118953
Molecular Weight (calculated)
8750.8 Da
IEP (calculated)
10.552
GRAVY (calculated)
-0.572
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MEEEKKTVRC CSECKTTKTP MWRGGPSGPK SLCNACGIRL MKQRRSELLG IRIIHSHKAY KKINSSPSSL SFSHGGVSL
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Arabidopsis Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.