Factsheet for Bra039614.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72649	Canola	nucleus	100.0	68.5
CDY13040	Canola	cytosol	95.62	65.83
AT2G18380.1	Thale cress	cytosol	81.75	53.85
Bra037221.1-P	Field mustard	nucleus	66.42	38.4
Bra017766.1-P	Field mustard	nucleus	51.09	37.04
Bra010563.1-P	Field mustard	cytosol	53.28	34.27
Bra009926.1-P	Field mustard	cytosol	19.71	34.18
Bra011695.1-P	Field mustard	nucleus	55.47	34.08
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	45.26	25.83
Bra036600.1-P	Field mustard	nucleus	18.98	25.24
Bra012883.1-P	Field mustard	nucleus	48.91	24.1
Bra012080.1-P	Field mustard	nucleus	40.15	23.31
Bra036854.1-P	Field mustard	nucleus	48.18	22.84
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	35.04	22.75
PGSC0003DMT400040074	Potato	nucleus	40.15	22.18
PGSC0003DMT400009031	Potato	plastid	38.69	21.46
Solyc02g085190.1.1	Tomato	plastid	39.42	21.43
Bra037421.1-P	Field mustard	nucleus	19.71	21.26
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	35.77	21.12
GSMUA_Achr7P25620_001	Banana	nucleus	35.77	21.03
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	34.31	20.98
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	35.04	20.87
Solyc02g062760.2.1	Tomato	nucleus	38.69	20.87
Bra020650.1-P	Field mustard	nucleus	21.17	20.71
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	30.66	20.69
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	35.04	20.69
Zm00001d043969_P001	Maize	endoplasmic reticulum	35.04	20.6
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	35.04	20.51
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	35.04	19.83
EES19963	Sorghum	mitochondrion, nucleus, vacuole	32.85	19.65
Bra040288.1-P	Field mustard	nucleus	19.71	19.42
KXG33047	Sorghum	extracellular	34.31	19.26
Os05t0567900-00	Rice	cytosol, extracellular, plastid	34.31	18.8
KRH43324	Soybean	nucleus	16.79	16.91
Bra022184.1-P	Field mustard	nucleus	20.44	16.87
Bra012742.1-P	Field mustard	nucleus	20.44	16.77
Bra033533.1-P	Field mustard	nucleus	21.17	16.2
Bra021209.1-P	Field mustard	nucleus	19.71	15.79
Bra035633.1-P	Field mustard	nucleus	24.09	10.96
Bra001644.1-P	Field mustard	nucleus	9.49	8.9
Bra006851.1-P	Field mustard	nucleus, plastid	24.09	8.59
Bra002788.1-P	Field mustard	nucleus	23.36	8.27
Bra019118.1-P	Field mustard	nucleus	23.36	8.25
Bra026461.1-P	Field mustard	nucleus	21.17	8.06

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra039614	EnsemblPlants:Bra039614.1	EnsemblPlants:Bra039614.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4FEU2	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF156	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI000254110B
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT2G18380 (E=1e-051) | transcription factor

Coordinates

chrA07:+:1468060..1468836

Molecular Weight (calculated)

15005.2 Da

IEP (calculated)

9.151

GRAVY (calculated)

-0.864

Length

137 amino acids

Sequence
(BLAST)

001: MSGDYFYHGG SAKTTSYKKG GGDHNLPRRC ASCDTTSTPL WRNGPKGPKS LCNACGIRFK KEERRAAARN SITSVGGSSA AEIPAGGNYY NHHHHYPSSS
101: PSWAHQNTQR VQYFSPAPEM EYPFVDDATA ASFLSWN

Best Arabidopsis Sequence Match ( AT2G18380.1 )
(BLAST)

001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN

Arabidopsis Description

GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.