Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g075610.2.1 | Tomato | plastid | 80.19 | 95.51 |
| PGSC0003DMT400063771 | Potato | nucleus | 53.77 | 37.75 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 43.4 | 37.1 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 45.28 | 33.8 |
| Os01t0976800-01 | Rice | nucleus | 45.28 | 33.8 |
| Os01t0343300-01 | Rice | nucleus | 40.57 | 32.82 |
| KXG32453 | Sorghum | nucleus | 38.68 | 32.8 |
| Zm00001d034751_P001 | Maize | nucleus | 50.0 | 32.52 |
| EER93149 | Sorghum | nucleus | 48.11 | 32.48 |
| PGSC0003DMT400011779 | Potato | nucleus | 50.94 | 32.14 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 48.11 | 31.48 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 41.51 | 30.99 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 36.79 | 30.95 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 43.4 | 30.87 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 47.17 | 30.86 |
| Zm00001d009193_P001 | Maize | plastid | 39.62 | 30.22 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 47.17 | 29.94 |
| PGSC0003DMT400060241 | Potato | nucleus | 54.72 | 29.44 |
| Zm00001d037605_P001 | Maize | nucleus | 39.62 | 29.37 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 46.23 | 29.17 |
| Zm00001d040775_P001 | Maize | nucleus | 39.62 | 28.57 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 38.68 | 28.08 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 38.68 | 28.08 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 34.91 | 27.61 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 46.23 | 27.37 |
| KXG21349 | Sorghum | cytosol | 39.62 | 26.92 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 45.28 | 26.67 |
| PGSC0003DMT400006011 | Potato | nucleus | 41.51 | 26.35 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 44.34 | 25.97 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 38.68 | 25.79 |
| Zm00001d011771_P001 | Maize | nucleus | 45.28 | 24.62 |
| EES04307 | Sorghum | nucleus | 49.06 | 23.96 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 40.57 | 22.28 |
| HORVU1Hr1G022710.3 | Barley | plastid | 39.62 | 19.44 |
| PGSC0003DMT400000761 | Potato | nucleus | 40.57 | 14.98 |
| PGSC0003DMT400011449 | Potato | nucleus | 39.62 | 14.69 |
| PGSC0003DMT400009031 | Potato | plastid | 28.3 | 12.15 |
| PGSC0003DMT400040074 | Potato | nucleus | 26.42 | 11.29 |
Protein Annotations
| EntrezGene:102584883 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000679 |
| InterPro:IPR013088 | UniProt:M1D4R0 | PFAM:PF00320 | EnsemblPlantsGene:PGSC0003DMG400031828 | PGSC:PGSC0003DMG400031828 | EnsemblPlants:PGSC0003DMT400081417 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000294C7BA |
| RefSeq:XP_006359887.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | : | : | : |
Description
GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400031828]
Coordinates
chr9:-:53081642..53082373
Molecular Weight (calculated)
11938.8 Da
IEP (calculated)
10.044
GRAVY (calculated)
-0.571
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLKEVKRSE EAEEMKSCSY CHTTKTPLWR SGPSGPKSLC NACGIKYNKK RRQILGVEKK RRIVCKEEKS REIGKLMGFG GKLREEEQAA ILLMALSCGS
101: VGKLLF
101: VGKLLF
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Arabidopsis Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.