Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05639 | Canola | nucleus | 76.26 | 80.92 |
| Bra020650.1-P | Field mustard | nucleus | 76.98 | 76.43 |
| CDY33918 | Canola | nucleus | 75.54 | 74.47 |
| AT3G06740.1 | Thale cress | nucleus | 64.75 | 60.4 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 64.75 | 58.82 |
| KRH02314 | Soybean | nucleus | 51.8 | 51.43 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 43.17 | 48.39 |
| KRH50773 | Soybean | nucleus | 50.36 | 44.3 |
| Solyc12g099370.1.1 | Tomato | nucleus | 50.36 | 41.67 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 42.45 | 41.55 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 37.41 | 41.27 |
| PGSC0003DMT400011779 | Potato | nucleus | 49.64 | 41.07 |
| AT5G26930.1 | Thale cress | cytosol | 35.25 | 40.83 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 43.17 | 40.27 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 38.85 | 38.03 |
| Os01t0976800-01 | Rice | nucleus | 38.85 | 38.03 |
| AT3G16870.1 | Thale cress | nucleus | 49.64 | 36.32 |
| PGSC0003DMT400060241 | Potato | nucleus | 51.08 | 36.04 |
| EER93149 | Sorghum | nucleus | 40.29 | 35.67 |
| Solyc05g054400.2.1 | Tomato | nucleus | 50.36 | 35.53 |
| AT4G16141.1 | Thale cress | cytosol | 48.2 | 34.01 |
| Zm00001d034751_P001 | Maize | nucleus | 38.13 | 32.52 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 38.13 | 31.55 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 36.69 | 31.48 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 36.69 | 31.48 |
| Zm00001d037605_P001 | Maize | nucleus | 32.37 | 31.47 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 36.69 | 30.54 |
| Os01t0343300-01 | Rice | nucleus | 28.06 | 29.77 |
| KXG32453 | Sorghum | nucleus | 26.62 | 29.6 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 37.41 | 29.05 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 37.41 | 28.89 |
| Zm00001d011771_P001 | Maize | nucleus | 38.85 | 27.69 |
| KXG21349 | Sorghum | cytosol | 30.94 | 27.56 |
| Zm00001d009193_P001 | Maize | plastid | 27.34 | 27.34 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 25.9 | 26.87 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 28.06 | 26.71 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 34.53 | 26.52 |
| EES04307 | Sorghum | nucleus | 41.01 | 26.27 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 27.34 | 26.03 |
| Zm00001d040775_P001 | Maize | nucleus | 25.9 | 24.49 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 27.34 | 23.9 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 31.65 | 22.8 |
| HORVU1Hr1G022710.3 | Barley | plastid | 27.34 | 17.59 |
| AT4G36620.1 | Thale cress | cytosol | 24.46 | 16.11 |
| AT2G18380.1 | Thale cress | cytosol | 20.86 | 13.94 |
| AT5G56860.1 | Thale cress | nucleus | 37.41 | 13.07 |
| AT4G26150.1 | Thale cress | cytosol | 32.37 | 12.78 |
| AT3G50870.1 | Thale cress | cytosol | 24.46 | 11.53 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:834990 | UniProt:A0A178URK9 | EMBL:AB493782 | ProteinID:AED95794.1 |
| ArrayExpress:AT5G49300 | EnsemblPlantsGene:AT5G49300 | RefSeq:AT5G49300 | TAIR:AT5G49300 | RefSeq:AT5G49300-TAIR-G | EnsemblPlants:AT5G49300.1 |
| TAIR:AT5G49300.1 | ProteinID:BAB10348.1 | EMBL:BT029338 | UniProt:C0SVS9 | Symbol:GATA16 | GO:GO:0000977 |
| GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR013088 | RefSeq:NP_199741.1 |
| ProteinID:OAO96263.1 | PFAM:PF00320 | PO:PO:0000293 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 |
| PANTHER:PTHR10071:SF242 | UniProt:Q9FJ10 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000009DB1F | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
Coordinates
chr5:-:19984626..19985788
Molecular Weight (calculated)
15322.4 Da
IEP (calculated)
10.351
GRAVY (calculated)
-0.882
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.